updating a data structure tree

Author: djarecka

notebooks/basic_data_input.ipynb

@@ -35,33 +35,55 @@
     "To be able to import data, you first need to be aware about the structure of your dataset. The structure of the dataset for this tutorial is according to BIDS, and looks as follows:\n",
     "\n",
     "    ds000114\n",
+    "    ├── CHANGES\n",
     "    ├── dataset_description.json\n",
     "    ├── derivatives\n",
+    "    │   ├── fmriprep\n",
+    "    │   │   └── sub01...sub10\n",
+    "    │   │        └── ...\n",
     "    │   ├── freesurfer\n",
-    "    │   │   └── ...\n",
+    "    │       ├── fsaverage\n",
+    "    │       ├── fsaverage5\n",
+    "    │   │   └── sub01...sub10\n",
+    "    │   │        └── ...\n",
     "    ├── dwi.bval\n",
     "    ├── dwi.bvec\n",
     "    ├── sub-01\n",
-    "    │   ├── anat\n",
-    "    │   │   └── sub-01_T1w.nii.gz\n",
-    "    │   └── func\n",
-    "    │       ├── sub-01_task-fingerfootlips_bold.nii.gz\n",
-    "    │       ├── sub-01_task-linebisection_bold.nii.gz\n",
-    "    │       └── sub-01_task-linebisection_events.tsv\n",
-    "    │   └── dwi\n",
-    "    │       └── sub-01_dwi.nii.gz\n",
-    "    ├── sub-02\n",
-    "    │   ├── anat\n",
-    "    │   │   └── sub-02_T1w.nii.gz\n",
-    "    │   └── func\n",
-    "    │       ├── sub-02_task-fingerfootlips_bold.nii.gz\n",
-    "    │       ├── sub-02_task-linebisection_bold.nii.gz\n",
-    "    │       └── sub-02_task-linebisection_events.tsv\n",
-    "    │   └── dwi\n",
-    "    │       └── sub-02_dwi.nii.gz\n",
+    "    │   ├── ses-retest    \n",
+    "    │       ├── anat\n",
+    "    │       │   └── sub-01_ses-retest_T1w.nii.gz\n",
+    "    │       ├──func\n",
+    "    │           ├── sub-01_ses-retest_task-covertverbgeneration_bold.nii.gz\n",
+    "    │           ├── sub-01_ses-retest_task-fingerfootlips_bold.nii.gz\n",
+    "    │           ├── sub-01_ses-retest_task-linebisection_bold.nii.gz\n",
+    "    │           ├── sub-01_ses-retest_task-linebisection_events.tsv\n",
+    "    │           ├── sub-01_ses-retest_task-overtverbgeneration_bold.nii.gz\n",
+    "    │           └── sub-01_ses-retest_task-overtwordrepetition_bold.nii.gz\n",
+    "    │       └── dwi\n",
+    "    │           └── sub-01_ses-retest_dwi.nii.gz\n",
+    "    │   ├── ses-test    \n",
+    "    │       ├── anat\n",
+    "    │       │   └── sub-01_ses-test_T1w.nii.gz\n",
+    "    │       ├──func\n",
+    "    │           ├── sub-01_ses-test_task-covertverbgeneration_bold.nii.gz\n",
+    "    │           ├── sub-01_ses-test_task-fingerfootlips_bold.nii.gz\n",
+    "    │           ├── sub-01_ses-test_task-linebisection_bold.nii.gz\n",
+    "    │           ├── sub-01_ses-test_task-linebisection_events.tsv\n",
+    "    │           ├── sub-01_ses-test_task-overtverbgeneration_bold.nii.gz\n",
+    "    │           └── sub-01_ses-test_task-overtwordrepetition_bold.nii.gz\n",
+    "    │       └── dwi\n",
+    "    │           └── sub-01_ses-retest_dwi.nii.gz\n",
+    "    ├── sub-02..sub-10\n",
+    "    │   └── ...\n",
+    "    ├── task-covertverbgeneration_bold.json\n",
+    "    ├── task-covertverbgeneration_events.tsv\n",
     "    ├── task-fingerfootlips_bold.json\n",
     "    ├── task-fingerfootlips_events.tsv\n",
-    "    └── task-linebisection_bold.json"
+    "    ├── task-linebisection_bold.json\n",
+    "    ├── task-overtverbgeneration_bold.json\n",
+    "    ├── task-overtverbgeneration_events.tsv\n",
+    "    ├── task-overtwordrepetition_bold.json\n",
+    "    └── task-overtwordrepetition_events.tsv"
    ]
   },
   {
@@ -266,8 +288,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "170730-12:25:32,161 workflow INFO:\n",
-      "\t Executing node datagrabber in dir: /tmp/tmplmop1pqt/datagrabber\n"
+      "170731-16:49:15,196 workflow INFO:\n",
+      "\t Executing node datagrabber in dir: /tmp/tmpzjje_eve/datagrabber\n"
      ]
     },
     {
@@ -364,8 +386,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "170730-12:25:34,430 workflow INFO:\n",
-      "\t Executing node selectfiles in dir: /tmp/tmp5z9bopfl/selectfiles\n"
+      "170731-16:49:26,226 workflow INFO:\n",
+      "\t Executing node selectfiles in dir: /tmp/tmph1rm2buv/selectfiles\n"
      ]
     },
     {
@@ -414,8 +436,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "170730-12:25:35,400 workflow INFO:\n",
-      "\t Executing node selectfiles in dir: /tmp/tmp59333sfs/selectfiles\n"
+      "170731-16:49:27,447 workflow INFO:\n",
+      "\t Executing node selectfiles in dir: /tmp/tmperd7urq6/selectfiles\n"
      ]
     },
     {
@@ -551,8 +573,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "170730-12:25:39,247 workflow INFO:\n",
-      "\t Executing node fssource in dir: /tmp/tmpo_jxbjpx/fssource\n"
+      "170731-16:49:48,883 workflow INFO:\n",
+      "\t Executing node fssource in dir: /tmp/tmpg2wzxfkr/fssource\n"
      ]
     }
    ],
@@ -622,8 +644,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "170730-12:25:41,991 workflow INFO:\n",
-      "\t Executing node fssource in dir: /tmp/tmpo_jxbjpx/fssource\n"
+      "170731-16:49:59,487 workflow INFO:\n",
+      "\t Executing node fssource in dir: /tmp/tmpg2wzxfkr/fssource\n"
      ]
     }
    ],