FIX import from bids.layout instead of bids.grabbids

Author: Shotgunosine

notebooks/basic_data_input_bids.ipynb

@@ -34,7 +34,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from bids.grabbids import BIDSLayout\n",
+    "from bids.layout import BIDSLayout\n",
     "layout = BIDSLayout(\"/data/ds000114/\")"
    ]
   },
@@ -187,7 +187,7 @@
    },
    "outputs": [],
    "source": [
-    "from bids.grabbids import BIDSLayout\n",
+    "from bids.layout import BIDSLayout\n",
     "layout = BIDSLayout(\"/data/ds000114/\")\n",
     "\n",
     "layout.get(subject='02', return_type='file', task=\"linebisection\")"
@@ -209,7 +209,7 @@
    "source": [
     "def get_niftis(subject_id, data_dir):\n",
     "    # Remember that all the necessary imports need to be INSIDE the function for the Function Interface to work!\n",
-    "    from bids.grabbids import BIDSLayout\n",
+    "    from bids.layout import BIDSLayout\n",
     "    \n",
     "    layout = BIDSLayout(data_dir)\n",
     "    \n",
@@ -330,7 +330,7 @@
     "from nipype.interfaces.utility import IdentityInterface, Function\n",
     "\n",
     "def get_T1w(subject_id, data_dir):\n",
-    "    from bids.grabbids import BIDSLayout\n",
+    "    from bids.layout import BIDSLayout\n",
     "    \n",
     "    layout = BIDSLayout(data_dir)\n",
     "    \n",
@@ -399,7 +399,7 @@
    "outputs": [],
    "source": [
     "def printMetadata(path, data_dir):\n",
-    "    from bids.grabbids import BIDSLayout\n",
+    "    from bids.layout import BIDSLayout\n",
     "    layout = BIDSLayout(data_dir)\n",
     "    print(\"\\n\\nanalyzing \" + path + \"\\nTR: \"+ str(layout.get_metadata(path)[\"RepetitionTime\"]) + \"\\n\\n\")\n",
     "    \n",
@@ -454,7 +454,7 @@
     "def get_niftis(subject_id, data_dir):\n",
     "    # Remember that all the necesary imports need to be INSIDE the function \n",
     "    # for the Function Interface to work!\n",
-    "    from bids.grabbids import BIDSLayout\n",
+    "    from bids.layout import BIDSLayout\n",
     "    \n",
     "    layout = BIDSLayout(data_dir)\n",
     "    \n",
@@ -481,7 +481,7 @@
    "source": [
     "# and now modify analyzeBOLD2\n",
     "def printMetadata_et(path, data_dir):\n",
-    "    from bids.grabbids import BIDSLayout\n",
+    "    from bids.layout import BIDSLayout\n",
     "    layout = BIDSLayout(data_dir)\n",
     "    print(\"\\n\\nanalyzing \" + path + \"\\nTR: \"+ \n",
     "          str(layout.get_metadata(path)[\"RepetitionTime\"]) +\n",