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jdkenteffigies
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Apply suggestions from code review (@effigies)
Co-authored-by: Chris Markiewicz <[email protected]>
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nipype/interfaces/fsl/utils.py

Lines changed: 8 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -2857,20 +2857,21 @@ class Text2VestInputSpec(FSLCommandInputSpec):
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class Text2VestOutputSpec(TraitedSpec):
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out_file = File(exists=True, desc="matrix data in the format used by FSL tools")
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out_file = File(desc="matrix data in the format used by FSL tools")
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class Text2Vest(FSLCommand):
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"""
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Use FSL Text2Vest`https://web.mit.edu/fsl_v5.0.10/fsl/doc/wiki/GLM(2f)CreatingDesignMatricesByHand.html`_
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to convert your plain text design matrix data into the format used by the FSL tools.
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Examples
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--------
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>>> from nipype.interfaces.fsl import Text2Vest
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>>> t2v = Text2Vest()
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>>> t2v.inputs.in_file = "design.txt"
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>>> t2v.inputs.out_file = "design.mat"
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>>> t2v.cmdline # doctest: +ELLIPSIS
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>>> t2v.cmdline
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'Text2Vest design.txt design.mat'
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>>> res = t2v.run() # doctest: +SKIP
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"""
@@ -2891,28 +2892,29 @@ class Vest2TextInputSpec(FSLCommandInputSpec):
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)
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out_file = File(
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mandatory=True,
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"design.txt",
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usedefault=True,
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desc="file name to store text output from matrix",
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argstr="%s",
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position=1,
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)
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class Vest2TextOutputSpec(TraitedSpec):
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out_file = File(exists=True, desc="plain text representation of FSL matrix")
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out_file = File(desc="plain text representation of FSL matrix")
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class Vest2Text(FSLCommand):
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"""
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Use FSL Vest2Text`https://web.mit.edu/fsl_v5.0.10/fsl/doc/wiki/GLM(2f)CreatingDesignMatricesByHand.html`_
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to convert your design.mat design.con and design.fts files into plain text.
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Examples
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--------
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>>> from nipype.interfaces.fsl import Vest2Text
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>>> v2t = Vest2Text()
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>>> v2t.inputs.in_file = "design.mat"
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>>> v2t.inputs.out_file = "design.txt"
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>>> v2t.cmdline # doctest: +ELLIPSIS
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>>> v2t.cmdline
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'Vest2Text design.mat design.txt'
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>>> res = v2t.run() # doctest: +SKIP
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"""

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