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doc: pep8 fmrirealign
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nipype/interfaces/nipy/preprocess.py

Lines changed: 22 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -75,25 +75,38 @@ class FmriRealign4dInputSpec(BaseInterfaceInputSpec):
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tr = traits.Float(desc="TR in seconds",
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mandatory=True)
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slice_order = traits.List(traits.Int(),
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desc='0 based slice order', requires=["time_interp"])
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desc='0 based slice order',
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requires=["time_interp"])
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tr_slices = traits.Float(desc="TR slices")
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start = traits.Float(0.0, usedefault=True,
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desc="time offset into TR to align slices to")
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time_interp = traits.Enum(True, requires=["slice_order"],
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desc="Assume smooth changes across time e.g., fmri series. If you don't want slice timing correction set this to undefined")
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loops = traits.Either(traits.Int(5,usedefault=True), traits.List(traits.Int), usedefault=True, desc="loops within each run")
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between_loops = traits.Either(traits.Int(5),traits.List(traits.Int), usedefault=True, desc="loops used to \
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desc="Assume smooth changes across time e.g.,\
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fmri series. If you don't want slice timing \
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correction set this to undefined")
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loops = traits.Either(traits.Int(5,usedefault=True),
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traits.List(traits.Int),
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usedefault=True,
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desc="loops within each run")
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between_loops = traits.Either(traits.Int(5),
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traits.List(traits.Int),
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usedefault=True, desc="loops used to \
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realign different \
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runs")
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speedup = traits.Either(traits.Int(5),traits.List(traits.Int(5)), usedefault=True, desc="successive image \
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sub-sampling factors \
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for acceleration")
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speedup = traits.Either(traits.Int(5),
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traits.List(traits.Int(5)),
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usedefault=True,
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desc="successive image \
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sub-sampling factors \
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for acceleration")
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class FmriRealign4dOutputSpec(TraitedSpec):
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out_file = OutputMultiPath(File(exists=True), desc="Realigned files")
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par_file = OutputMultiPath(File(exists=True), desc="Motion parameter files")
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out_file = OutputMultiPath(File(exists=True),
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desc="Realigned files")
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par_file = OutputMultiPath(File(exists=True),
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desc="Motion parameter files")
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class FmriRealign4d(BaseInterface):

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