@@ -75,25 +75,38 @@ class FmriRealign4dInputSpec(BaseInterfaceInputSpec):
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tr = traits .Float (desc = "TR in seconds" ,
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mandatory = True )
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slice_order = traits .List (traits .Int (),
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- desc = '0 based slice order' , requires = ["time_interp" ])
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+ desc = '0 based slice order' ,
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+ requires = ["time_interp" ])
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tr_slices = traits .Float (desc = "TR slices" )
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start = traits .Float (0.0 , usedefault = True ,
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desc = "time offset into TR to align slices to" )
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time_interp = traits .Enum (True , requires = ["slice_order" ],
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- desc = "Assume smooth changes across time e.g., fmri series. If you don't want slice timing correction set this to undefined" )
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- loops = traits .Either (traits .Int (5 ,usedefault = True ), traits .List (traits .Int ), usedefault = True , desc = "loops within each run" )
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- between_loops = traits .Either (traits .Int (5 ),traits .List (traits .Int ), usedefault = True , desc = "loops used to \
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+ desc = "Assume smooth changes across time e.g.,\
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+ fmri series. If you don't want slice timing \
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+ correction set this to undefined" )
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+ loops = traits .Either (traits .Int (5 ,usedefault = True ),
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+ traits .List (traits .Int ),
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+ usedefault = True ,
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+ desc = "loops within each run" )
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+ between_loops = traits .Either (traits .Int (5 ),
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+ traits .List (traits .Int ),
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+ usedefault = True , desc = "loops used to \
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realign different \
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runs" )
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- speedup = traits .Either (traits .Int (5 ),traits .List (traits .Int (5 )), usedefault = True , desc = "successive image \
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- sub-sampling factors \
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- for acceleration" )
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+ speedup = traits .Either (traits .Int (5 ),
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+ traits .List (traits .Int (5 )),
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+ usedefault = True ,
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+ desc = "successive image \
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+ sub-sampling factors \
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+ for acceleration" )
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class FmriRealign4dOutputSpec (TraitedSpec ):
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- out_file = OutputMultiPath (File (exists = True ), desc = "Realigned files" )
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- par_file = OutputMultiPath (File (exists = True ), desc = "Motion parameter files" )
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+ out_file = OutputMultiPath (File (exists = True ),
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+ desc = "Realigned files" )
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+ par_file = OutputMultiPath (File (exists = True ),
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+ desc = "Motion parameter files" )
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class FmriRealign4d (BaseInterface ):
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