Merge pull request #417 from satra/fix/captureoutput

fix: all of stdout captured in subprocess call closes #181

Author: satra

nipype/interfaces/base.py

@@ -932,7 +932,7 @@ def _read(self, drain):
         self._lastidx = len(self._rows)
 
 
-def run_command(runtime, timeout=0.2):
+def run_command(runtime, timeout=0.01):
     """
     Run a command, read stdout and stderr, prefix with timestamp. The returned
     runtime contains a merged stdout+stderr log with timestamps