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doc: Switch from zenodo.json to CITATION.cff, add contributors
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.zenodo.json

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CITATION.cff

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cff-version: 1.2.0
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title: "NiTransforms: A Python tool to read, represent, manipulate, and apply N-dimensional spatial transforms"
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license: MIT
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type: software
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url: https://github.com/nipy/nitransforms/
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version: 24.1.1
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date-released: 2024-12-18
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abstract: |
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Spatial transforms formalize mappings between coordinates of objects in biomedical images.
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Transforms typically are the outcome of image registration methodologies, which estimate
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the alignment between two images.
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Image registration is a prominent task present in nearly all standard image processing
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and analysis pipelines.
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The proliferation of software implementations of image registration methodologies has
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resulted in a spread of data structures and file formats used to preserve and communicate
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transforms.
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This segregation of formats precludes the compatibility between tools and endangers the
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reproducibility of results.
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We propose a software tool capable of converting between formats and resampling images
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to apply transforms generated by the most popular neuroimaging packages and libraries
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(AFNI, FSL, FreeSurfer, ITK, and SPM).
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The proposed software is subject to continuous integration tests to check the
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compatibility with each supported tool after every change to the code base.
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Compatibility between software tools and imaging formats is a necessary bridge
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to ensure the reproducibility of results and enable the optimization and evaluation
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of current image processing and analysis workflows.
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keywords:
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- neuroimaging
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- spatial normalization
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authors:
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- family-names: Goncalves
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given-names: Mathias
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orcid: https://orcid.org/0000-0002-7252-7771
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affiliation: "Department of Psychology, Stanford University, Stanford, CA, USA"
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- family-names: Markiewicz
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given-names: Christopher J.
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orcid: https://orcid.org/0000-0002-6533-164X
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affiliation: "Department of Psychology, Stanford University, Stanford, CA, USA"
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- family-names: Moia
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given-names: Stefano
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orcid: https://orcid.org/0000-0002-2553-3327
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affiliation: "Basque Center on Cognition Brain and Language, San Sebastian, Spain"
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- family-names: Waller
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given-names: Lea
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orcid: https://orcid.org/0000-0002-3239-6957
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affiliation: Charite Universitatsmedizin Berlin, Germany
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- family-names: Pinsard
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given-names: Basile
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orcid: https://orcid.org/0000-0002-4391-3075
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affiliation: University of Montréal, Montréal, Canada
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- family-names: Banús
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given-names: Jaume
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orcid: https://orcid.org/0000-0001-9318-6323
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- family-names: Visconti di Oleggio Castello
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given-names: Matteo
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orcid: https://orcid.org/0000-0001-7931-5272
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affiliation: University of California Berkeley, Berkeley, CA, USA
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- family-names: Marabotto
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given-names: Julien
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orcid: https://orcid.org/0009-0003-7070-5217
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affiliation: Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
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- family-names: Ma
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given-names: Feilong
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orcid: https://orcid.org/0000-0002-6838-3971
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affiliation: Dartmouth College, Hanover, NH, United States
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- family-names: Nielson
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given-names: Dylan
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orcid: https://orcid.org/0000-0003-4613-6643
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affiliation: Machine Learning Team, National Institute of Mental Health, USA
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- family-names: Cluce
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given-names: Jon
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orcid: https://orcid.org/0000-0001-7590-5806
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affiliation: Child Mind Institute, New York, NY, USA
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- family-names: Shain
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given-names: Cory
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orcid: https://orcid.org/0000-0002-2704-7197
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affiliation: Stanford University, Stanford, CA, USA
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## When contributing, please copy and uncomment the following lines
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# - family-names:
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# given-names:
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# orcid: https://orcid.org/
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# affiliation:
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- family-names: Ghosh
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given-names: Satrajit
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orcid: https://orcid.org/0000-0002-5312-6729
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affiliation: "McGovern Institute for Brain Research, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA; and Department of Otolaryngology, Harvard Medical School, Boston, MA, USA"
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- family-names: Poldrack
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given-names: Russell A.
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orcid: https://orcid.org/0000-0001-6755-0259
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affiliation: "Department of Psychology, Stanford University, Stanford, CA, USA"
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- family-names: Esteban
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given-names: Oscar
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orcid: https://orcid.org/0000-0001-8435-6191
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affiliation: "Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland"
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identifiers:
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- description: Concept DOI for the software
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type: doi
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value: 10.5281/zenodo.5499693

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