Fixed bugs in mimicus library configuration

mimicus/config.py now tests for the existence of directories
before creating them. Wrong variable names in mimicus/default.conf
were corrected.

Author: Nedim Šrndić

mimicus/config.py

@@ -79,8 +79,9 @@ def parse_config():
         data_root = os.path.join(project_root, 'data')
         config.set('DEFAULT', 'data_root', data_root)
         config.set('DEFAULT', 'conf_root', conf_root)
-        os.mkdir(config.get('pdfratequeryscheduler', 'query_dir'))
-        os.mkdir(config.get('pdfratequeryscheduler', 'reply_dir'))
+        from mimicus.tools.utility import mkdir_p
+        mkdir_p(config.get('pdfratequeryscheduler', 'query_dir'))
+        mkdir_p(config.get('pdfratequeryscheduler', 'reply_dir'))
         config.write(open(custom_conf, 'wb'))
 
     # A naive way to check if the configuration file was customized

mimicus/default.conf

@@ -18,9 +18,9 @@ conf_root = /dev/null
 
 [datasets_test]
 
-csv_in = %(project_root)s/mini-train.csv
-csv_temp = %(project_root)s/temp123.csv
-contagio_standardizer = %(project_root)s/contagio-all.standardizer
+csv_in = %(data_root)s/mini-train.csv
+csv_temp = %(data_root)s/temp123.csv
+contagio_standardizer = %(data_root)s/contagio-all.standardizer
 
 
 [pdfrateproxy]
@@ -46,14 +46,14 @@ sleep_time = 10
 
 [RandomForest_test]
 
-traindata = %(project_root)s/mini-train.csv
-noveldata = %(project_root)s/mini-test.csv
-modelfile = %(project_root)s/rfmodel.rda
+traindata = %(data_root)s/mini-train.csv
+noveldata = %(data_root)s/mini-test.csv
+modelfile = %(data_root)s/rfmodel.rda
 
 
 [sklearn_SVC_test]
 
-traindata = %(project_root)s/mini-train.csv
-noveldata = %(project_root)s/mini-test.csv
-modelfile = %(project_root)s/svcmodel.pickle
+traindata = %(data_root)s/mini-train.csv
+noveldata = %(data_root)s/mini-test.csv
+modelfile = %(data_root)s/svcmodel.pickle