Merge branch 'master' into feature/runner-lock-on-project

* master: (147 commits)
  Update CHANGELOG
  Remove deprecated issues_tracker and issues_tracker_id from project
  Schema doesn’t reflect the changes of the last 3 migrations
  Revert CHANGELOG
  Also rename "find" in the specs
  Change to new Notes styleguide
  Add guide on changing a document's location
  Change logs.md location in README
  Move logs/logs.md to administration/logs.md
  Make "four phase test"
  Only show branches for revert / cherry-pick
  Instrument all Banzai::ReferenceParser classes
  Removed old comment from update_column_in_batches
  Update columns in batches until no rows are left
  Remove counters from Pipeline navigation
  Handle NULL migration errors in migration helpers
  Fix typo causing related branches to Error 500
  Improved SVG sanitizer specs to include smoke tests for clean.
  Refactored SVG sanitizer
  Added SVG sanitizer fix to the changelog
  ...

Author: godfat

.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,3 @@
+We’re closing our issue tracker on GitHub so we can focus on the GitLab.com project and respond to issues more quickly.
+
+We encourage you to open an issue on the [GitLab.com issue tracker](https://gitlab.com/gitlab-org/gitlab-ce/issues). You can log into GitLab.com using your GitHub account.

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,3 @@
+Thank you for taking the time to contribute back to GitLab!
+
+Please open a merge request [on GitLab.com](https://gitlab.com/gitlab-org/gitlab-ce/merge_requests), we look forward to reviewing your contribution! You can log into GitLab.com using your GitHub account.

.gitlab-ci.yml

@@ -7,7 +7,8 @@ services:
 cache:
   key: "ruby21"
   paths:
-  - vendor
+  - vendor/apt
+  - vendor/ruby
 
 variables:
   MYSQL_ALLOW_EMPTY_PASSWORD: "1"
@@ -91,9 +92,7 @@ update-knapsack:
     - export KNAPSACK_REPORT_PATH=knapsack/spinach_node_${CI_NODE_INDEX}_${CI_NODE_TOTAL}_report.json
     - export KNAPSACK_GENERATE_REPORT=true
     - cp knapsack/spinach_report.json ${KNAPSACK_REPORT_PATH}
-    - knapsack spinach "-r rerun"
-    # retry failed tests 3 times
-    - retry '[ ! -e tmp/spinach-rerun.txt ] || bin/spinach -r rerun $(cat tmp/spinach-rerun.txt)'
+    - knapsack spinach "-r rerun" || retry '[ ! -e tmp/spinach-rerun.txt ] || bundle exec spinach -r rerun $(cat tmp/spinach-rerun.txt)'
   artifacts:
     paths:
     - knapsack/

.rubocop.yml

@@ -13,7 +13,8 @@ AllCops:
   # Exclude some GitLab files
   Exclude:
     - 'vendor/**/*'
-    - 'db/**/*'
+    - 'db/*'
+    - 'db/fixtures/**/*'
     - 'tmp/**/*'
     - 'bin/**/*'
     - 'lib/backup/**/*'
@@ -348,7 +349,7 @@ Style/MultilineArrayBraceLayout:
 
 # Avoid multi-line chains of blocks.
 Style/MultilineBlockChain:
-  Enabled: false
+  Enabled: true
 
 # Ensures newlines after multiline block do statements.
 Style/MultilineBlockLayout:

CHANGELOG

@@ -1,17 +1,22 @@
 Please view this file on the master branch, on stable branches it's out of date.
 
 v 8.9.0 (unreleased)
+  - Fix Error 500 when using closes_issues API with an external issue tracker
   - Bulk assign/unassign labels to issues.
   - Ability to prioritize labels !4009 / !3205 (Thijs Wouters)
   - Fix endless redirections when accessing user OAuth applications when they are disabled
   - Allow enabling wiki page events from Webhook management UI
   - Bump rouge to 1.11.0
+  - Fix issue with arrow keys not working in search autocomplete dropdown
   - Make EmailsOnPushWorker use Sidekiq mailers queue
   - Fix wiki page events' webhook to point to the wiki repository
+  - Don't show tags for revert and cherry-pick operations
   - Fix issue todo not remove when leave project !4150 (Long Nguyen)
   - Allow customisable text on the 'nearly there' page after a user signs up
   - Bump recaptcha gem to 3.0.0 to remove deprecated stoken support
+  - Fix SVG sanitizer to allow more elements
   - Allow forking projects with restricted visibility level
+  - Added descriptions to notification settings dropdown
   - Improve note validation to prevent errors when creating invalid note via API
   - Reduce number of fog gem dependencies
   - Remove project notification settings associated with deleted projects
@@ -22,13 +27,17 @@ v 8.9.0 (unreleased)
   - `git clone https://host/namespace/project` now works, in addition to using the `.git` suffix
   - Bump nokogiri to 1.6.8
   - Use gitlab-shell v3.0.0
+  - Upgrade to jQuery 2
   - Use Knapsack to evenly distribute tests across multiple nodes
   - Add `sha` parameter to MR merge API, to ensure only reviewed changes are merged
   - Don't allow MRs to be merged when commits were added since the last review / page load
   - Add DB index on users.state
   - Add rake task 'gitlab:db:configure' for conditionally seeding or migrating the database
   - Changed the Slack build message to use the singular duration if necessary (Aran Koning)
+  - Links from a wiki page to other wiki pages should be rewritten as expected
+  - Add option to project to only allow merge requests to be merged if the build succeeds (Rui Santos)
   - Fix issues filter when ordering by milestone
+  - Added artifacts:when to .gitlab-ci.yml - this requires GitLab Runner 1.3
   - Todos will display target state if issuable target is 'Closed' or 'Merged'
   - Fix bug when sorting issues by milestone due date and filtering by two or more labels
   - Add support for using Yubikeys (U2F) for two-factor authentication
@@ -38,35 +47,45 @@ v 8.9.0 (unreleased)
   - Use downcased path to container repository as this is expected path by Docker
   - Projects pending deletion will render a 404 page
   - Measure queue duration between gitlab-workhorse and Rails
+  - Make Omniauth providers specs to not modify global configuration
   - Make authentication service for Container Registry to be compatible with < Docker 1.11
   - Make it possible to lock a runner from being enabled for other projects
   - Add Application Setting to configure Container Registry token expire delay (default 5min)
   - Cache assigned issue and merge request counts in sidebar nav
   - Use Knapsack only in CI environment
   - Cache project build count in sidebar nav
+  - Add milestone expire date to the right sidebar
   - Fix markdown_spec to use before instead of before(:all) to properly cleanup database after testing
   - Reduce number of queries needed to render issue labels in the sidebar
   - Improve error handling importing projects
   - Remove duplicated notification settings
   - Put project Files and Commits tabs under Code tab
+  - Decouple global notification level from user model
   - Replace Colorize with Rainbow for coloring console output in Rake tasks.
+  - Add workhorse controller and API helpers
   - An indicator is now displayed at the top of the comment field for confidential issues.
   - RepositoryCheck::SingleRepositoryWorker public and private methods are now instrumented
   - Improve issuables APIs performance when accessing notes !4471
   - External links now open in a new tab
-
-v 8.8.4 (unreleased)
+  - Markdown editor now correctly resets the input value on edit cancellation !4175
+  - Toggling a task list item in a issue/mr description does not creates a Todo for mentions
+  - Improved UX of date pickers on issue & milestone forms
+  - Cache on the database if a project has an active external issue tracker.
+  - Put project Labels and Milestones pages links under Issues and Merge Requests tabs as subnav
+  - All classes in the Banzai::ReferenceParser namespace are now instrumented
+  - Remove deprecated issues_tracker and issues_tracker_id from project model
+
+v 8.8.5 (unreleased)
   - Ensure branch cleanup regardless of whether the GitHub import process succeeds
-  - Fix issue with arrow keys not working in search autocomplete dropdown
   - Fix todos page throwing errors when you have a project pending deletion
   - Reduce number of SQL queries when rendering user references
-  - Upgrade to jQuery 2
-  - Remove prev/next buttons on issues and merge requests
   - Import GitHub repositories respecting the API rate limit
   - Fix importer for GitHub comments on diff
   - Disable Webhooks before proceeding with the GitHub import
-  - Added descriptions to notification settings dropdown
-  - Markdown editor now correctly resets the input value on edit cancellation !4175
+  - Fix incremental trace upload API when using multi-byte UTF-8 chars in trace
+
+v 8.8.4
+  - Fix LDAP-based login for users with 2FA enabled. !4493
 
 v 8.8.3
   - Fix 404 page when viewing TODOs that contain milestones or labels in different projects. !4312
@@ -178,6 +197,7 @@ v 8.8.0
   - Fixed advice on invalid permissions on upload path !2948 (Ludovic Perrine)
   - Allows MR authors to have the source branch removed when merging the MR. !2801 (Jeroen Jacobs)
   - When creating a .gitignore file a dropdown with templates will be provided
+  - Shows the issue/MR list search/filter form and corrects the mobile styling for guest users. #17562
 
 v 8.7.7
   - Fix import by `Any Git URL` broken if the URL contains a space

Gemfile

@@ -245,7 +245,7 @@ end
 
 group :development do
   gem "foreman"
-  gem 'brakeman', '~> 3.2.0', require: false
+  gem 'brakeman', '~> 3.3.0', require: false
 
   gem 'letter_opener_web', '~> 1.3.0'
   gem 'quiet_assets', '~> 1.0.2'

Gemfile.lock

@@ -97,16 +97,7 @@ GEM
     bootstrap-sass (3.3.6)
       autoprefixer-rails (>= 5.2.1)
       sass (>= 3.3.4)
-    brakeman (3.2.1)
-      erubis (~> 2.6)
-      haml (>= 3.0, < 5.0)
-      highline (>= 1.6.20, < 2.0)
-      ruby2ruby (~> 2.3.0)
-      ruby_parser (~> 3.8.1)
-      safe_yaml (>= 1.0)
-      sass (~> 3.0)
-      slim (>= 1.3.6, < 4.0)
-      terminal-table (~> 1.4)
+    brakeman (3.3.2)
     browser (2.0.3)
     builder (3.2.2)
     bullet (5.0.0)
@@ -338,7 +329,6 @@ GEM
     hashie (3.4.3)
     health_check (1.5.1)
       rails (>= 2.3.0)
-    highline (1.7.8)
     hipchat (1.5.2)
       httparty
       mimemagic
@@ -642,10 +632,7 @@ GEM
     ruby-saml (1.1.2)
       nokogiri (>= 1.5.10)
       uuid (~> 2.3)
-    ruby2ruby (2.3.0)
-      ruby_parser (~> 3.1)
-      sexp_processor (~> 4.0)
-    ruby_parser (3.8.1)
+    ruby_parser (3.8.2)
       sexp_processor (~> 4.1)
     rubyntlm (0.5.2)
     rubypants (0.2.0)
@@ -655,7 +642,7 @@ GEM
     safe_yaml (1.0.4)
     sanitize (2.1.0)
       nokogiri (>= 1.4.4)
-    sass (3.4.21)
+    sass (3.4.22)
     sass-rails (5.0.4)
       railties (>= 4.0.0, < 5.0)
       sass (~> 3.1)
@@ -704,9 +691,6 @@ GEM
       tilt (>= 1.3, < 3)
     six (0.2.0)
     slack-notifier (1.2.1)
-    slim (3.0.6)
-      temple (~> 0.7.3)
-      tilt (>= 1.3.3, < 2.1)
     slop (3.6.0)
     spinach (0.8.10)
       colorize
@@ -747,10 +731,8 @@ GEM
       railties (>= 3.2.5, < 6)
     teaspoon-jasmine (2.2.0)
       teaspoon (>= 1.0.0)
-    temple (0.7.6)
     term-ansicolor (1.3.2)
       tins (~> 1.0)
-    terminal-table (1.5.2)
     test_after_commit (0.4.2)
       activerecord (>= 3.2)
     thin (1.6.4)
@@ -759,7 +741,7 @@ GEM
       rack (~> 1.0)
     thor (0.19.1)
     thread_safe (0.3.5)
-    tilt (2.0.2)
+    tilt (2.0.5)
     timecop (0.8.1)
     timfel-krb5-auth (0.8.3)
     tinder (1.10.1)
@@ -848,7 +830,7 @@ DEPENDENCIES
   better_errors (~> 1.0.1)
   binding_of_caller (~> 0.7.2)
   bootstrap-sass (~> 3.3.0)
-  brakeman (~> 3.2.0)
+  brakeman (~> 3.3.0)
   browser (~> 2.0.3)
   bullet
   bundler-audit

app/assets/javascripts/activities.js.coffee

@@ -1,11 +1,14 @@
 class @Activities
   constructor: ->
-    Pager.init 20, true
+    Pager.init 20, true, false, @updateTooltips
     $(".event-filter-link").on "click", (event) =>
       event.preventDefault()
       @toggleFilter($(event.currentTarget))
       @reloadActivities()
 
+  updateTooltips: ->
+    gl.utils.localTimeAgo($('.js-timeago', '#activity'))
+
   reloadActivities: ->
     $(".content_list").html ''
     Pager.init 20, true

app/assets/javascripts/application.js.coffee

@@ -35,7 +35,6 @@
 #= require raphael
 #= require g.raphael
 #= require g.bar
-#= require Chart
 #= require branch-graph
 #= require ace/ace
 #= require ace/ext-searchbox
@@ -163,19 +162,6 @@ $ ->
       $el.data('placement') || 'bottom'
   )
 
-  $('.header-logo .home').tooltip(
-    placement: (_, el) ->
-      $el = $(el)
-      if $('.page-with-sidebar').hasClass('page-sidebar-collapsed') then 'right' else 'bottom'
-    container: 'body'
-  )
-
-  $('.page-with-sidebar').tooltip(
-    selector: '.sidebar-collapsed .nav-sidebar a, .sidebar-collapsed a.sidebar-user'
-    placement: 'right'
-    container: 'body'
-  )
-
   # Form submitter
   $('.trigger-submit').on 'change', ->
     $(@).parents('form').submit()
@@ -208,6 +194,7 @@ $ ->
 
   $('.navbar-toggle').on 'click', ->
     $('.header-content .title').toggle()
+    $('.header-content .header-logo').toggle()
     $('.header-content .navbar-collapse').toggle()
     $('.navbar-toggle').toggleClass('active')
     $('.navbar-toggle i').toggleClass("fa-angle-right fa-angle-left")
@@ -226,6 +213,10 @@ $ ->
     form = btn.closest("form")
     new ConfirmDangerModal(form, text)
 
+
+  $(document).on 'click', 'button', ->
+    $(this).blur()
+
   $('input[type="search"]').each ->
     $this = $(this)
     $this.attr 'value', $this.val()
@@ -238,7 +229,6 @@ $ ->
       $this.attr 'value', $this.val()
 
   $sidebarGutterToggle = $('.js-sidebar-toggle')
-  $navIconToggle = $('.toggle-nav-collapse')
 
   $(document)
     .off 'breakpoint:change'
@@ -248,10 +238,6 @@ $ ->
         if $gutterIcon.hasClass('fa-angle-double-right')
           $sidebarGutterToggle.trigger('click')
 
-        $navIcon = $navIconToggle.find('.fa')
-        if $navIcon.hasClass('fa-angle-left')
-          $navIconToggle.trigger('click')
-
   fitSidebarForSize = ->
     oldBootstrapBreakpoint = bootstrapBreakpoint
     bootstrapBreakpoint = bp.getBreakpointSize()
@@ -264,9 +250,10 @@ $ ->
       $(document).trigger('breakpoint:change', [bootstrapBreakpoint])
 
   $(window)
-    .off "resize"
-    .on "resize", (e) ->
+    .off "resize.app"
+    .on "resize.app", (e) ->
       fitSidebarForSize()
 
+  gl.awardsHandler = new AwardsHandler()
   checkInitialSidebarSize()
   new Aside()