{"id":"https://openalex.org/W4404754830","doi":"https://doi.org/10.1089/cmb.2024.0720","title":"CLHGNNMDA: Hypergraph Neural Network Model Enhanced by Contrastive Learning for miRNA\u2013Disease Association Prediction","display_name":"CLHGNNMDA: Hypergraph Neural Network Model Enhanced by Contrastive Learning for miRNA\u2013Disease Association Prediction","publication_year":2024,"publication_date":"2024-11-27","ids":{"openalex":"https://openalex.org/W4404754830","doi":"https://doi.org/10.1089/cmb.2024.0720","pmid":"https://pubmed.ncbi.nlm.nih.gov/39602201"},"language":"en","primary_location":{"id":"doi:10.1089/cmb.2024.0720","is_oa":true,"landing_page_url":"https://doi.org/10.1089/cmb.2024.0720","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0720?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443","https://openalex.org/P4310320017"],"host_organization_lineage_names":["Mary Ann Liebert, Inc.","SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0720?download=true","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100749286","display_name":"Rong Zhu","orcid":"https://orcid.org/0000-0002-0687-7343"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rong Zhu","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0002-0687-7343","affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115592204","display_name":"Yong Wang","orcid":"https://orcid.org/0000-0003-4177-5462"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Wang","raw_affiliation_strings":["Laboratory Experimental Teaching and Equipment Management Center, Qufu Normal University, Rizhao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory Experimental Teaching and Equipment Management Center, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100648398","display_name":"Ling-Yun Dai","orcid":"https://orcid.org/0000-0002-5473-323X"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling-Yun Dai","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I202126657"],"apc_list":null,"apc_paid":null,"fwci":0.4802,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.73544425,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"32","issue":"1","first_page":"47","last_page":"63"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12676","display_name":"Machine Learning and ELM","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.6994029879570007},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.685783863067627},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.6073461771011353},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.577815055847168},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5487804412841797},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.45387497544288635},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.44800031185150146},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4239461421966553},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3927859663963318},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2503620386123657},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1651323139667511},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.1485135555267334},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14844104647636414},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13885349035263062},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.09254959225654602},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08668380975723267}],"concepts":[{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.6994029879570007},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.685783863067627},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.6073461771011353},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.577815055847168},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5487804412841797},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.45387497544288635},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.44800031185150146},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4239461421966553},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3927859663963318},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2503620386123657},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1651323139667511},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.1485135555267334},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14844104647636414},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13885349035263062},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.09254959225654602},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08668380975723267},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1089/cmb.2024.0720","is_oa":true,"landing_page_url":"https://doi.org/10.1089/cmb.2024.0720","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0720?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443","https://openalex.org/P4310320017"],"host_organization_lineage_names":["Mary Ann Liebert, Inc.","SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:39602201","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39602201","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1089/cmb.2024.0720","is_oa":true,"landing_page_url":"https://doi.org/10.1089/cmb.2024.0720","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0720?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443","https://openalex.org/P4310320017"],"host_organization_lineage_names":["Mary Ann Liebert, Inc.","SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404754830.pdf","grobid_xml":"https://content.openalex.org/works/W4404754830.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W2128768066","https://openalex.org/W2146292498","https://openalex.org/W2158135353","https://openalex.org/W2170505850","https://openalex.org/W2344103844","https://openalex.org/W2463737032","https://openalex.org/W2555500380","https://openalex.org/W2765907185","https://openalex.org/W2765950793","https://openalex.org/W2781702232","https://openalex.org/W2795380834","https://openalex.org/W2799307902","https://openalex.org/W2892880750","https://openalex.org/W2894990412","https://openalex.org/W2898440040","https://openalex.org/W2944666528","https://openalex.org/W2966720510","https://openalex.org/W2967638886","https://openalex.org/W2970472075","https://openalex.org/W2972020367","https://openalex.org/W2983166786","https://openalex.org/W2991094260","https://openalex.org/W3035524453","https://openalex.org/W3097173659","https://openalex.org/W3104355095","https://openalex.org/W3112621589","https://openalex.org/W3128906305","https://openalex.org/W3143789190","https://openalex.org/W3157330827","https://openalex.org/W3158091578","https://openalex.org/W3158143432","https://openalex.org/W3162538759","https://openalex.org/W3196005553","https://openalex.org/W3197001103","https://openalex.org/W3215531133","https://openalex.org/W4225402571","https://openalex.org/W4226276166","https://openalex.org/W4246271082","https://openalex.org/W4283695165","https://openalex.org/W4283785215","https://openalex.org/W4285076853","https://openalex.org/W4289642021","https://openalex.org/W4294167348","https://openalex.org/W4294376371","https://openalex.org/W4295241431","https://openalex.org/W4297183296","https://openalex.org/W4303699847","https://openalex.org/W4307502334","https://openalex.org/W4313706461","https://openalex.org/W4323921635","https://openalex.org/W4367321066","https://openalex.org/W4372236528","https://openalex.org/W4381611929","https://openalex.org/W4385489679","https://openalex.org/W4385515013","https://openalex.org/W4386620529","https://openalex.org/W4386860244","https://openalex.org/W4390706181","https://openalex.org/W4390749828","https://openalex.org/W4390872292","https://openalex.org/W4390986263","https://openalex.org/W4391005914","https://openalex.org/W4391126443","https://openalex.org/W4391348880","https://openalex.org/W4391484788","https://openalex.org/W4393951653","https://openalex.org/W4394773567","https://openalex.org/W4399319394"],"related_works":["https://openalex.org/W4376608589","https://openalex.org/W1537073411","https://openalex.org/W1948107826","https://openalex.org/W3138003926","https://openalex.org/W1630514295","https://openalex.org/W4300037846","https://openalex.org/W4288275998","https://openalex.org/W2963081352","https://openalex.org/W4376608938","https://openalex.org/W2472555608"],"abstract_inverted_index":{"Numerous":[0],"biological":[1],"experiments":[2],"have":[3],"demonstrated":[4],"that":[5,196],"microRNA":[6],"(miRNA)":[7],"is":[8,97,145],"involved":[9],"in":[10],"gene":[11],"regulation":[12],"within":[13],"cells,":[14],"and":[15,17,34,40,42,56,77,92,108,124,126,133,151,177,212],"mutations":[16],"abnormal":[18],"expression":[19],"of":[20,26,53,122,131,165,181,210,220],"miRNA":[21,33],"can":[22,36],"cause":[23],"a":[24,62,140,166,201,213],"myriad":[25],"intricate":[27],"diseases.":[28,78,93],"Forecasting":[29],"the":[30,51,119,149,163,179,185,197,205,217],"association":[31],"between":[32,75],"diseases":[35,134],"enhance":[37],"disease":[38],"prevention":[39],"treatment":[41],"accelerate":[43],"drug":[44,57],"research,":[45],"which":[46],"holds":[47],"considerable":[48],"importance":[49],"for":[50,106,162],"development":[52],"clinical":[54],"medicine":[55],"research.":[58],"This":[59,170],"investigation":[60],"introduces":[61],"contrastive":[63,142,160,167],"learning-augmented":[64],"hypergraph":[65,95,101],"neural":[66],"network":[67],"model,":[68],"termed":[69],"CLHGNNMDA,":[70],"aimed":[71],"at":[72],"predicting":[73],"associations":[74],"miRNAs":[76,91,132],"Initially,":[79],"CLHGNNMDA":[80,156,198],"constructs":[81],"multiple":[82],"hypergraphs":[83],"by":[84,230],"leveraging":[85],"diverse":[86],"similarity":[87],"metrics":[88,223],"related":[89],"to":[90,99,102,115,127,147,227],"Subsequently,":[94],"convolution":[96],"applied":[98],"each":[100,137],"extract":[103],"feature":[104,120],"representations":[105,121],"nodes":[107,123],"hyperedges.":[109],"Following":[110],"this,":[111],"autoencoders":[112],"are":[113,224],"employed":[114],"reconstruct":[116],"information":[117],"regarding":[118],"hyperedges":[125],"integrate":[128],"various":[129],"features":[130],"extracted":[135],"from":[136,192],"hypergraph.":[138],"Finally,":[139],"joint":[141],"loss":[143,168],"function":[144],"utilized":[146],"refine":[148],"model":[150],"optimize":[152],"its":[153],"parameters.":[154],"The":[155,189],"framework":[157],"employs":[158],"multi-hypergraph":[159],"learning":[161],"construction":[164],"function.":[169],"approach":[171],"takes":[172],"into":[173],"account":[174],"inter-view":[175],"interactions":[176],"upholds":[178],"principle":[180],"consistency,":[182],"thereby":[183],"augmenting":[184],"model's":[186],"representational":[187],"efficacy.":[188],"results":[190],"obtained":[191],"fivefold":[193],"cross-validation":[194],"substantiate":[195],"algorithm":[199],"achieves":[200],"mean":[202,214],"area":[203,215],"under":[204,216],"receiver":[206],"operating":[207],"characteristic":[208],"curve":[209,219],"0.9635":[211],"precision-recall":[218],"0.9656.":[221],"These":[222],"notably":[225],"superior":[226],"those":[228],"attained":[229],"contemporary":[231],"state-of-the-art":[232],"methodologies.":[233]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
