{"id":"https://openalex.org/W2138080747","doi":"https://doi.org/10.1109/ipdps.2012.17","title":"Enhancing the Scalability of Consistency-based Progressive Multiple Sequences Alignment Applications","display_name":"Enhancing the Scalability of Consistency-based Progressive Multiple Sequences Alignment Applications","publication_year":2012,"publication_date":"2012-05-01","ids":{"openalex":"https://openalex.org/W2138080747","doi":"https://doi.org/10.1109/ipdps.2012.17","mag":"2138080747"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2012.17","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2012.17","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 26th International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061024368","display_name":"Miquel Orobitg","orcid":"https://orcid.org/0000-0002-6106-2403"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M. Orobitg","raw_affiliation_strings":["Department of Computer Science, Universitat de Lleida, Lleida, Spain","Dept. of Comput. Sci., Univ. de Lleida, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Universitat de Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. de Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068472593","display_name":"Fernando Cores","orcid":"https://orcid.org/0000-0003-2910-6709"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Cores","raw_affiliation_strings":["Department of Computer Science, Universitat de Lleida, Lleida, Spain","Dept. of Comput. Sci., Univ. de Lleida, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Universitat de Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. de Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081297325","display_name":"Fernando Guirado","orcid":"https://orcid.org/0000-0003-1352-9555"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Guirado","raw_affiliation_strings":["Department of Computer Science, Universitat de Lleida, Lleida, Spain","Dept. of Comput. Sci., Univ. de Lleida, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Universitat de Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. de Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075543102","display_name":"Carsten Kemena","orcid":"https://orcid.org/0000-0002-2416-9842"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C. Kemena","raw_affiliation_strings":["Centre For Genomic Regulation, Universitat Pompeu Fabra, Barcelona, Spain","Centre For Genomic Regul., Univ. Pompeu Fabra, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre For Genomic Regulation, Universitat Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Centre For Genomic Regul., Univ. Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058332830","display_name":"C\u00e9dric Notredame","orcid":"https://orcid.org/0000-0003-1461-0988"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C. Notredame","raw_affiliation_strings":["Centre For Genomic Regulation, Universitat Pompeu Fabra, Barcelona, Spain","Centre For Genomic Regul., Univ. Pompeu Fabra, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre For Genomic Regulation, Universitat Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Centre For Genomic Regul., Univ. Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008549660","display_name":"A. Ripoll","orcid":"https://orcid.org/0000-0001-6874-9278"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Ripoll","raw_affiliation_strings":["Computer Architecture and Operation System, Universitat Authn\u00f2ma de Barcelona, Bellaterra, Spain","Comput. Archit. & Oper. Syst., Univ. Autonoma de Barcelona, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture and Operation System, Universitat Authn\u00f2ma de Barcelona, Bellaterra, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Comput. Archit. & Oper. Syst., Univ. Autonoma de Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I123044942"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.815,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.92876826,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"4297","issue":null,"first_page":"71","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9564999938011169,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.9031915664672852},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7819195985794067},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.7301861643791199},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5633918046951294},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.5484798550605774},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5135617256164551},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.4748421311378479},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4501851797103882},{"id":"https://openalex.org/keywords/memory-management","display_name":"Memory management","score":0.43398311734199524},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.42478734254837036},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4122186303138733},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.35692769289016724},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33046531677246094},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16704979538917542},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.12115222215652466},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.07887786626815796}],"concepts":[{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.9031915664672852},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7819195985794067},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.7301861643791199},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5633918046951294},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.5484798550605774},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5135617256164551},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.4748421311378479},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4501851797103882},{"id":"https://openalex.org/C176649486","wikidata":"https://www.wikidata.org/wiki/Q2308807","display_name":"Memory management","level":3,"score":0.43398311734199524},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.42478734254837036},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4122186303138733},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.35692769289016724},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33046531677246094},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16704979538917542},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.12115222215652466},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.07887786626815796},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C98986596","wikidata":"https://www.wikidata.org/wiki/Q1143031","display_name":"Semiconductor memory","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ipdps.2012.17","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2012.17","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 26th International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W169927615","https://openalex.org/W1595838892","https://openalex.org/W1767231739","https://openalex.org/W1969153299","https://openalex.org/W1977512185","https://openalex.org/W1986014242","https://openalex.org/W2001134403","https://openalex.org/W2002638840","https://openalex.org/W2004178884","https://openalex.org/W2004754163","https://openalex.org/W2008841836","https://openalex.org/W2014145971","https://openalex.org/W2074231493","https://openalex.org/W2083734282","https://openalex.org/W2087064593","https://openalex.org/W2097555181","https://openalex.org/W2099254366","https://openalex.org/W2099689798","https://openalex.org/W2102502076","https://openalex.org/W2106882534","https://openalex.org/W2107566660","https://openalex.org/W2108187446","https://openalex.org/W2109268917","https://openalex.org/W2109710144","https://openalex.org/W2126753236","https://openalex.org/W2127322768","https://openalex.org/W2130625618","https://openalex.org/W2132926880","https://openalex.org/W2143357251","https://openalex.org/W2144362290","https://openalex.org/W2155518645","https://openalex.org/W2163860567","https://openalex.org/W2168614088","https://openalex.org/W2170896626","https://openalex.org/W2709625040","https://openalex.org/W4236236547","https://openalex.org/W6606906674","https://openalex.org/W6685248075"],"related_works":["https://openalex.org/W2144839145","https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W2038009067","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2149492307"],"abstract_inverted_index":{"Multiple":[0],"Sequence":[1],"Alignment":[2],"(MSA)":[3],"is":[4,59,83,112],"an":[5],"extremely":[6],"powerful":[7],"tool":[8,45],"for":[9],"important":[10],"biological":[11],"applications,":[12],"such":[13],"as":[14,133],"phylogenetic":[15],"analysis,":[16],"identification":[17],"of":[18,39,73,102],"conserved":[19],"motifs":[20],"and":[21,23,71,90,96,99,122],"domains":[22],"structure":[24],"prediction.":[25],"In":[26,109],"this":[27],"paper":[28],"we":[29],"propose":[30],"a":[31,41,48,134,141,160],"new":[32],"approach":[33,82],"to":[34,52,60,67,85,114,153],"reduce":[35,86,115],"the":[36,62,69,74,87,93,97,100,105,116,126,130,137,144,164],"computational":[37],"requirements":[38,118],"TCoffee,":[40],"memory":[42,63,88,117],"demanding":[43],"MSA":[44],"that":[46,80,104,168],"uses":[47],"consistency":[49],"based":[50],"scheme":[51],"produce":[53],"more":[54],"accurate":[55],"alignments.":[56],"Our":[57],"goal":[58],"minimize":[61],"constraints":[64],"in":[65],"order":[66],"increase":[68,91],"performance":[70,95],"scalability":[72,132],"application.":[75],"The":[76],"experimental":[77],"results":[78,156],"show":[79],"our":[81],"able":[84,113],"consumption":[89],"both":[92],"time":[94,147],"number":[98],"length":[101],"sequences":[103],"method":[106],"can":[107,148],"align.":[108],"summary,":[110],"it":[111],"by":[119,151,170],"between":[120],"72%":[121],"58%":[123],"depending":[124],"on":[125,163],"optimization":[127],"level,":[128],"improving":[129],"alignment":[131,145,166],"whole.":[135],"Also,":[136],"library":[138],"reduction":[139],"yields":[140],"further":[142],"improvement:":[143],"execution":[146],"be":[149],"reduced":[150],"up":[152],"92%.":[154],"These":[155],"are":[157],"obtained":[158],"without":[159],"significant":[161],"impact":[162],"final":[165],"quality,":[167],"declines":[169],"less":[171],"than":[172],"3%.":[173]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
