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<dblpperson name="Stephen Malina" pid="334/1437" n="5">
<person key="homepages/334/1437" mdate="2022-11-24">
<author pid="334/1437">Stephen Malina</author>
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<r><article publtype="informal" key="journals/corr/abs-2411-10548" mdate="2025-11-14">
<author pid="393/1549">Peter St. John</author>
<author pid="222/4532">Dejun Lin</author>
<author pid="187/2997">Polina Binder</author>
<author pid="161/0035">Malcolm Greaves</author>
<author pid="393/3883">Vega Shah</author>
<author pid="13/8065">John St. John</author>
<author pid="163/6037">Adrian Lange</author>
<author pid="388/3583">Patrick D. Hsu</author>
<author pid="393/4953">Rajesh Illango</author>
<author pid="51/5675">Arvind Ramanathan</author>
<author pid="25/1529">Anima Anandkumar</author>
<author pid="199/1443">David H. Brookes</author>
<author pid="190/7434">Akosua Busia</author>
<author pid="370/0393">Abhishaike Mahajan</author>
<author pid="334/1437">Stephen Malina</author>
<author pid="270/9974">Neha Prasad</author>
<author pid="211/7905">Sam Sinai</author>
<author pid="304/2106">Lindsay Edwards</author>
<author pid="226/4702">Thomas Gaudelet</author>
<author orcid="0000-0001-5786-0798" pid="185/8376">Cristian Regep</author>
<author pid="179/5577">Martin Steinegger</author>
<author pid="66/159">Burkhard Rost</author>
<author pid="276/6183">Alexander Brace</author>
<author pid="285/6543">Kyle Hippe</author>
<author pid="349/4689">Luca Naef</author>
<author pid="177/3149">Keisuke Kamata</author>
<author pid="317/2309">George Armstrong</author>
<author pid="393/3045">Kevin Boyd</author>
<author pid="250/4995">Zhonglin Cao</author>
<author pid="338/9163">Han-Yi Chou</author>
<author pid="351/7504">Simon Chu</author>
<author pid="358/6098">Allan dos Santos Costa</author>
<author pid="203/8846">Sajad Darabi</author>
<author pid="80/8393">Eric Dawson</author>
<author pid="336/6909">Kieran Didi</author>
<author pid="45/3990-3">Cong Fu 0003</author>
<author pid="206/7093">Mario Geiger</author>
<author pid="326/8649">Michelle Gill</author>
<author pid="376/9192">Darren Hsu</author>
<author pid="393/1077">Gagan Kaushik</author>
<author pid="284/2070">Maria Korshunova</author>
<author pid="393/4511">Steven Kothen-Hill</author>
<author pid="190/1819">Youhan Lee</author>
<author pid="41/7841-15">Meng Liu 0015</author>
<author pid="02/8535">Micha Livne</author>
<author pid="393/4404">Zachary McClure</author>
<author pid="223/6043">Jonathan Mitchell</author>
<author pid="385/8865">Alireza Moradzadeh</author>
<author pid="220/3848">Ohad Mosafi</author>
<author pid="339/5225">Youssef Nashed</author>
<author pid="174/1411">Saee Paliwal 0001</author>
<author pid="393/0310">Yuxing Peng 0005</author>
<author pid="275/0048">Sara Rabhi</author>
<author pid="281/9132">Farhad Ramezanghorbani</author>
<author pid="326/8720">Danny Reidenbach</author>
<author pid="261/4771">Camir Ricketts</author>
<author pid="393/4742">Brian Roland</author>
<author pid="48/7549">Kushal Shah</author>
<author pid="226/5075">Tyler Shimko</author>
<author pid="393/1815">Hassan Sirelkhatim</author>
<author pid="84/6295">Savitha Srinivasan</author>
<author pid="276/6184">Abraham C. Stern</author>
<author pid="317/7557">Dorota Toczydlowska</author>
<author pid="393/4965">Srimukh Prasad Veccham</author>
<author pid="392/9599">Niccol&#242; Alberto Elia Venanzi</author>
<author pid="393/1236">Anton Vorontsov</author>
<author pid="393/3695">Jared Wilber</author>
<author pid="393/4107">Isabel Wilkinson</author>
<author pid="130/4552">Wei Jing Wong</author>
<author pid="393/2849">Eva Xue</author>
<author pid="393/0969">Cory Ye</author>
<author pid="54/1184">Xin Yu</author>
<author pid="06/6785">Yang Zhang</author>
<author pid="57/3780">Guoqing Zhou</author>
<author pid="393/2236">Becca Zandstein</author>
<author pid="241/2270">Christian Dallago</author>
<author pid="391/5815">Bruno Trentini</author>
<author pid="274/0939">Emine K&#252;&#231;&#252;kbenli</author>
<author pid="276/6540">Timur Rvachov</author>
<author pid="252/5842">Eddie Calleja</author>
<author pid="215/2437">Johnny Israeli</author>
<author pid="393/2370">Harry Clifford</author>
<author pid="337/0533">Risto Haukioja</author>
<author pid="392/9764">Nicholas Haemel</author>
<author pid="377/1143">Kyle Tretina</author>
<author pid="276/6538">Neha Tadimeti</author>
<author pid="130/0623">Anthony B. Costa</author>
<title>BioNeMo Framework: a modular, high-performance library for AI model development in drug discovery.</title>
<year>2024</year>
<volume>abs/2411.10548</volume>
<journal>CoRR</journal>
<ee type="oa">https://doi.org/10.48550/arXiv.2411.10548</ee>
<url>db/journals/corr/corr2411.html#abs-2411-10548</url>
<stream>streams/journals/corr</stream>
</article>
</r>
<r><article publtype="informal" key="journals/corr/abs-2311-05363" mdate="2023-11-14">
<author pid="360/5245">Farhan Damani</author>
<author pid="199/1443">David H. Brookes</author>
<author pid="360/5259">Theodore Sternlieb</author>
<author pid="360/5063">Cameron Webster</author>
<author pid="334/1437">Stephen Malina</author>
<author pid="360/5285">Rishi Jajoo</author>
<author pid="77/6910">Kathy Lin</author>
<author pid="211/7905">Sam Sinai</author>
<title>Beyond the training set: an intuitive method for detecting distribution shift in model-based optimization.</title>
<year>2023</year>
<volume>abs/2311.05363</volume>
<journal>CoRR</journal>
<ee type="oa">https://doi.org/10.48550/arXiv.2311.05363</ee>
<url>db/journals/corr/corr2311.html#abs-2311-05363</url>
</article>
</r>
<r><article key="journals/ploscb/MalinaCK22" mdate="2023-05-17">
<author orcid="0000-0002-7383-0094" pid="334/1437">Stephen Malina</author>
<author orcid="0000-0002-6908-6792" pid="346/8947">Daniel Cizin</author>
<author orcid="0000-0002-7408-146X" pid="03/11107">David A. Knowles</author>
<title>Deep mendelian randomization: Investigating the causal knowledge of genomic deep learning models.</title>
<pages>1009880</pages>
<year>2022</year>
<month>October</month>
<volume>18</volume>
<journal>PLoS Comput. Biol.</journal>
<number>10</number>
<ee type="oa">https://doi.org/10.1371/journal.pcbi.1009880</ee>
<url>db/journals/ploscb/ploscb18.html#MalinaCK22</url>
</article>
</r>
<r><inproceedings key="conf/mlcb/WheelockMGS22" mdate="2023-09-05">
<author pid="312/8640">Lauren Berk Wheelock</author>
<author pid="334/1437">Stephen Malina</author>
<author pid="334/0805">Jeffrey Gerold</author>
<author pid="211/7905">Sam Sinai</author>
<title>Forecasting labels under distribution-shift for machine-guided sequence design.</title>
<pages>166-180</pages>
<year>2022</year>
<booktitle>MLCB</booktitle>
<ee type="oa">https://proceedings.mlr.press/v200/wheelock22a.html</ee>
<crossref>conf/mlcb/2022</crossref>
<url>db/conf/mlcb/mlcb2022.html#WheelockMGS22</url>
</inproceedings>
</r>
<r><article publtype="informal" key="journals/corr/abs-2211-10422" mdate="2022-11-24">
<author pid="312/8640">Lauren Berk Wheelock</author>
<author pid="334/1437">Stephen Malina</author>
<author pid="334/0805">Jeffrey Gerold</author>
<author pid="211/7905">Sam Sinai</author>
<title>Forecasting labels under distribution-shift for machine-guided sequence design.</title>
<year>2022</year>
<volume>abs/2211.10422</volume>
<journal>CoRR</journal>
<ee type="oa">https://doi.org/10.48550/arXiv.2211.10422</ee>
<url>db/journals/corr/corr2211.html#abs-2211-10422</url>
</article>
</r>
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<co c="0"><na f="b/Binder:Polina" pid="187/2997">Polina Binder</na></co>
<co c="0"><na f="b/Boyd:Kevin" pid="393/3045">Kevin Boyd</na></co>
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<co c="0"><na f="b/Busia:Akosua" pid="190/7434">Akosua Busia</na></co>
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<co c="0"><na f="w/Wilber:Jared" pid="393/3695">Jared Wilber</na></co>
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<co c="0"><na f="y/Ye:Cory" pid="393/0969">Cory Ye</na></co>
<co c="0"><na f="y/Yu:Xin" pid="54/1184">Xin Yu</na></co>
<co c="0"><na f="z/Zandstein:Becca" pid="393/2236">Becca Zandstein</na></co>
<co c="0"><na f="z/Zhang:Yang" pid="06/6785">Yang Zhang</na></co>
<co c="0"><na f="z/Zhou:Guoqing" pid="57/3780">Guoqing Zhou</na></co>
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