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Commits on Nov 13, 2019

• fix readme

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  bd39c19

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Commits on Nov 12, 2019

• fix env yaml

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  1e98ded

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• fix readme

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  566fd48

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• conda environment

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  6c8503f

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• fix readme

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  0338652

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• fix tepid refine

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  df11851

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Commits on Nov 11, 2019

• fix remove temp in discover

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  a078ced

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Commits on Nov 7, 2019

• fix map

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  75832ae

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• fix-map

  

  Choudhury Rimjhim Roy (rchoudhury)

  committed
  b2eb813

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Commits on Oct 25, 2019

• Fix calccov

  rimjhimroy

  committed
  bca174e

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• calccov

  rimjhimroy

  committed
  c3d87cc

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Commits on Jun 6, 2019

• Merge pull request #7 from johanzi/patch-2

  Show description for 2b371bc
  timoast

  authored
  2b371bc

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• update samtools sort call for SE script

  timoast

  committed
  a6f7b22

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Commits on Apr 9, 2019

• Second correction samtools sort problem

  Show description for 591ec95
  johanzi

  authored
  591ec95

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Commits on Apr 19, 2017

• update samtools version

  

  timoast

  committed
  475e1dd

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• Add more test data

  

  timoast

  committed
  604491b

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• Add test when output is empty

  

  timoast

  committed
  7ccbf97

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• Check for samtools >1.3

  

  timoast

  committed
  78891fd

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• return 1 if intermediate file is empty

  

  timoast

  committed
  ab06b54

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Commits on Dec 6, 2016

• Added some additional documentation

  

  timoast

  committed
  5fdf3a6

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• Fix citation

  

  timoast

  committed
  52793cc

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• Update citation

  

  timoast

  committed
  e6ba5b6

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• Add unique naming to refinement step

  

  timoast

  committed
  c089938

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• Add unique naming for intermediate files

  Show description for 8fb8071
  

  timoast

  committed
  8fb8071

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Commits on Dec 1, 2016

• Fixed error in SE mode

  

  timoast

  committed
  dd00a39

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Commits on Oct 13, 2016

• Adjustments for running in SE mode

  

  timoast

  committed
  3b39dd2

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• Merge pull request #1 from ListerLab/se

  Show description for ad79b63
  

  Tim Stuart

  authored
  ad79b63

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Commits on Oct 11, 2016

• Update with SE mode information

  

  timoast

  committed
  b4ca840

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• Fix insertion calling for single end

  

  timoast

  committed
  27b56c5

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• bug fix

  

  timoast

  committed
  eb7fd37

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• Modify deletion code to run without discordant reads

  

  timoast

  committed
  6e25038

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• Calculate average read length

  

  timoast

  committed
  86f5d21

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• Fixed a bug

  

  timoast

  committed
  da75f20

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• Update to work with SE reads

  

  timoast

  committed
  20780b5

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Commits on Oct 10, 2016

• Fix test for PE mode

  

  timoast

  committed
  03c7512

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