Welch’s ANOVA

Standard ANOVA for unequal variance case

Rationale

• Welch’s ANOVA is a generalized form of Welch’s t-test (like ANOVA is the generalization of standard t-test)
• Welch shows that the distribution of the test statistics is approximately the same as the F statistics with a correction on the 2nd degree of freedom (demonator one)
• The proof essentially rely on Cumulant-Generating Function (CGF), i.e.: the logarithm of the moment generating function (MGF)

CGF definition

Test statistics

Formula for Welch’s ANOVA Test Statistic

Story

James’ ANOVA

Welch’s ANOVA is an enhancement on James’ ANOVA, where James’ ANOVA is to tackle the unequal variance case by saying that:

When n is large:

James statistics

The weighted sum of square follows the Chi square distribution, such that we can reject the null hypothesis when critical value exceeding some values from the Chi square distribution. Note that there is no F statistics (within-between group error ratio) involved.

When n is small:

Get Jeffy Fung’s stories in your inbox

Join Medium for free to get updates from this writer.

Remember me for faster sign in

It needs a complicated correction for obtaining the critical value from the Chi square distribution.

To start with

Base on James’ results, Welch conclude that:

• The test statistics does not have an exact distribution
• The distribution of the test statistics will asymptotic convergence to Chi squared distribution

Welch also thinks that

• There must be some relationship between the test statistics distribution and the F distribution

The proof

Welch’s original paper is to show that the distribution of the test statistics is approximately the same as the F statistics with a correction on the degree of freedom.

He proved by showing that the CGF are the same of the above 2 distributions, note that CGF also inherent the property of MGF that, if they have the same CGF/MGF, they have the same pdf.

Here are the brief steps:

1. He derives the CGF for the distribution of the test statistics
2. The test statistics depends on the sum of the degree of freedom inverse, he then omit the higher order terms for the approximation later on
3. He derives the CGF for the scaled F distribution, i.e.: it multipled by a scale constant and unknown correction of the degree of freedom
4. Again it depends on the sum of the degree of freedom inverse, by fixing anther degree of freedom, and omit the higher order terms
5. He derives the corrected degree of freedom by setting CGF of the above 2 distributions the same

Corrected degree of freedom

Ref

On the Comparison of Several Mean Values: An Alternative Approach (1951) (Welch’s ANOVA Original paper)