Package: samtools (1.22.1-1 and others)

Links for samtools

Debian Resources:

Download Source Package samtools:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [www.htslib.org]

Similar packages:

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Other Packages Related to samtools

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [not alpha, ia64, loong64, sh4]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.41) [sh4]

dep: libc6 (>= 2.42) [loong64]
dep: libc6.1 (>= 2.34) [alpha]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libhts3t64 (>= 1.17) [ia64]

C library for high-throughput sequencing data formats

dep: libhts3t64 (>= 1.22.1) [loong64]

dep: libhts3t64 (>= 1.22.1+ds-1) [not ia64, loong64]
dep: libncurses6 (>= 6)

shared libraries for terminal handling
dep: libtinfo6 (>= 6)

shared low-level terminfo library for terminal handling
dep: zlib1g (>= 1:1.1.4) [not alpha, armhf, hppa, i386, m68k, sh4]

compression library - runtime

dep: zlib1g (>= 1:1.2.3.3) [alpha, armhf, hppa, i386, m68k, sh4]

sug: cwltool

Common Workflow Language reference implementation

Download samtools

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.22.1-1	673.3 kB	1,886.0 kB	[list of files]
amd64	1.22.1-1	680.3 kB	1,495.0 kB	[list of files]
arm64	1.22.1-1	650.1 kB	1,755.0 kB	[list of files]
armhf	1.22.1-1	645.0 kB	1,556.0 kB	[list of files]
hppa (unofficial port)	1.22.1-1	677.6 kB	1,439.0 kB	[list of files]
i386	1.22.1-1	713.4 kB	1,632.0 kB	[list of files]
ia64 (unofficial port)	1.19.2-1+b1	716.1 kB	2,112.0 kB	[list of files]
loong64	1.22.1-1	670.3 kB	1,814.0 kB	[list of files]
m68k (unofficial port)	1.22.1-1	648.3 kB	1,420.0 kB	[list of files]
ppc64 (unofficial port)	1.22.1-1	693.8 kB	2,011.0 kB	[list of files]
ppc64el	1.22.1-1	706.9 kB	2,011.0 kB	[list of files]
riscv64	1.22.1-1	685.7 kB	1,339.0 kB	[list of files]
s390x	1.22.1-1	683.6 kB	1,555.0 kB	[list of files]
sh4 (unofficial port)	1.22.1-1	742.2 kB	1,686.0 kB	[list of files]
sparc64 (unofficial port)	1.22.1-1	641.8 kB	7,784.0 kB	[list of files]
x32 (unofficial port)	1.22.1-1	683.9 kB	1,460.0 kB	[list of files]