[libSBW-2.10.0] undefined reference to 'xml*'

Framework for Systems Biology

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#54 [libSBW-2.10.0] undefined reference to 'xml*'

Milestone: v1.0

Status: closed-fixed

Owner: Frank Bergmann

Labels: libSBW-2.10.0 (1) RPM packaging (1) XML (1)

Priority: 5

Updated: 2014-12-31

Created: 2014-12-30

Creator: Antonio Trande

Private: No

Hi.
The packaging of libSBML, libSEDML, libSBW continues.

I leave in attached a log of libSBW compilation with 'undefined reference to `xml*' errors during building of Broker executable file.

System: Fedora 21 x86_64 with libxml2-2.9.1.

Regards.

1 Attachments

libSBW_log.tar.gz

Discussion

Frank Bergmann - 2014-12-30

i will have a look (though for now the wrong log was attached :) )

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- Antonio Trande - 2014-12-30
  
  The log is related to libSBW building. Why is it wrong?
  
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  - Frank Bergmann - 2014-12-30
    
    sorry about that, it is getting late. I still was looking at the sedml log. In any case, i've released the current trunk as 2.11, so maybe you can give that a try, as many of the warnings have been resolved. And 2.11 builds fine for me on F21:
    
    https://sourceforge.net/projects/sbw/files/libSBW/2.11.0/
    
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Antonio Trande - 2014-12-30

It's still broken.

libSBW_log2.txt

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Frank Bergmann - 2014-12-31

Could you please also attach the CMakeCache.txt from the build directory. I need to find out why it would not link against xml2 in your case (when it does on my F21 box, where libxml2-devel is installed).

in any case with the latest commit I've added error messages in case the LIBXML_LIBRARY is not defined. I will hold with a release until you confirm that it works for you, for now the archive can be found under:

https://www.dropbox.com/s/lzz84eys05skmnx/sbw-core-2.11.0.tar.gz?dl=0

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Antonio Trande - 2014-12-31

in any case with the latest commit I've added error messages >in case the LIBXML_LIBRARY is not defined. I will hold with a >release until you confirm that it works for you, for now the >archive can be found under:

Ops! I had not defined the XML2 library, just its path.

-DLIBXML_LIBRARY:FILEPATH="-L%{_libdir} -lxml2" fixes this problem. :)

Last edit: Antonio Trande 2014-12-31

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Frank Bergmann - 2014-12-31

status: open --> closed-fixed

assigned_to: Frank Bergmann
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