Activity for MeV
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dorra fakhet posted a comment on discussion Feature requests/suggestions
Hello, I generated a PCA with Mev and I want to make some changes to the PCA. I want to change the size of the labels and the size of the axis legend, but I am not able to do this with the display function. Also, the function "store in cluster" is inactivated. Any suggestions please?
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Hello, I generate a PCA of my metabolomic data with Mev and I cannot change the size of axes legends (numbers) and the size of the name of the samples, when I export the figure as an image, the size of the samples is too small. Also, I cannot store the samples in clusters with this software version. Any suggestions please? Sincerely, Dorra.
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Daylan Tzompa posted a comment on discussion Feature requests/suggestions
I experince the same problem. Any solution?
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Erwin lagu posted a comment on discussion Open Discussion
Solved???
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Solved?
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Shweta Godbole posted a comment on discussion Help
Hello, I was trying to recreate the results of hierarchical clustering in R, however, my clustering results in R are different from those I have got via MeV ( Mev giving better results). In order to understand what is happening in every step, I wanted to recreate the plots in R. I was wondering if anyone could help me understand how are the trees created when we choose both options of sample tree and gene tree while building the trees in the first step of MeV, also I read in the documentation that...
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Sara Barbosa Salazar posted a comment on discussion Help
is there another link? this does not open anymore, and I am experience the same problem i windows
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Eric Armstrong posted a comment on discussion Feature requests/suggestions
Same here: Can't open MeV after OS update to Catalina (macOS 10.15.1)
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Duniya posted a comment on discussion Feature requests/suggestions
Hi I updated my mac to catalina. I would like to know if there is any update to run Mev as the old version is not working any more !!
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Tom Jameson posted a comment on discussion Help
Hi, I am trying to run SAM analysis on timecourse data (5 repeated samples taken from individuals in 2 independant groups) e.g. Subject 1, group A, time point 1 Subject 1, group A, time point 2 Subject 1, group A, time point 3 Subject 1, group A, time point 4 Subject 1, group A, time point 5 Subject 2, gorup B, time point 1 Subject 2, gorup B, time point 2 Subject 2, gorup B, time point 3 Subject 2, gorup B, time point 4 Subject 2, gorup B, time point 5 . . . 1) In the SAM analysis window, when selecting...
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Peter Hoyt posted a comment on discussion Help
In Windows 10 there doesn't seem to be any solution, which is too bad. MEV can be used for so many things. A 3D PCA plot of my RNAseq data would be very cool. I tried putting the Java3D 1.5.2 files in every folder of my Java Install (jdk1.8.0_162) but no joy. Even though the software picks up that Java3D is installed. Maybe if I took the Java 3D out of the path?
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Anamika posted a comment on discussion Help
I have run t-tests between groups using p-value threshold of 0.01, adjusted Bonferroni correction, 1000 permutations and Welch approximation. When I look at the p-values for significant genes, both raw and adjusted p-values are 0 for all significant genes. What does this mean and how do I get the p-values ? Thanks
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jesse posted a comment on discussion Help
I am using MeV 4.8.1 in Linux. If i make a gene distance matrix with a large number of genes (~20,000), the names of the genes overlap and are all jumbled... It seems to only be a probelm with a large number of genes. Of three linux computers, it happens on 2 of 3 of them. The interactive GDM is a really great feature of MeV and I would be at a loss with out it. I don't know what other information i could give to be more helpful. Has Anyone else seen this problem, or is it just me?
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Vinicius G posted a comment on discussion Help
Hi there, Every time I load MeV and try to load new data a pop up shows that MeV...
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liqida posted a comment on discussion Open Discussion
You can search it "java.lang.ArrayIndexOutOfBoundsException"on Google,it is an usual...
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Stefano posted a comment on discussion Open Discussion
Dear Mev Users today I run a cluster analysis with a small number of genes (2000)...
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Jeremy Dkhar posted a comment on discussion Help
Hi, Out of five annotation columns for the data type, 'tracking id', 'locus' and...
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Raquel Calloni posted a comment on discussion Help
Hi! I work with RNA-seq data and would like to know what is the program you use to...
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Tim Regan posted a comment on discussion Help
I'm comparing a bunch of arrays: 4 biological replicates (2 male, 2 female), 5 drug...
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Stefano Campanaro posted a comment on discussion Open Discussion
Hi, I am trying to perform hierarchical clustering of an extremely high number of...
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Tommaso Montanari posted a comment on discussion Help
Good morning, I am trying to use MeV's utilities edgeR and DeSeq in order to analyze...
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Melanie BODY posted a comment on discussion Help
Good morning! I am a new user of MeV and I need some help to figure out an issue...
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Hello! I am new on this forum and on MeV :) I am trying to run a PCA but every time...
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Anne Lamsa modified a comment on discussion Help
Hi, I've been doing some clustering and have noticed that for every tree (and the...
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Hi, I've been doing some clustering and have noticed that for every tree (and the...
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levk posted a comment on discussion Help
MeV 4.8 was developed against R version 2.11, although anything prior 3.0 tends to...
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Kyle Beauchemin posted a comment on discussion Help
Hi Everyone, I'm a graduate student working with a large transcriptomic dataset and...
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Franck posted a comment on discussion Help
It seems that there is a problem with libjri.so and JRI.jar. But I have install java...
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Hello, The installation under Linux 14.10 is good. In a first time I can start application...
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Michael Miles posted a comment on discussion Feature requests/suggestions
Mac version of MeV 4.9 has been mentioned -- but never delivered. The 4.8 versions...
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SteCC posted a comment on discussion Help
Hi everybody, is there any other place where I can download Express Converter 2.1...
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MeV released /OldFiles/MeV_4_3_linux.zip
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John Quackenbush posted a comment on discussion Open Discussion
They are ignored. On 12/17/2014 11:47 AM, Andrew Rahmberg wrote: How does MeV handle...
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Andrew Rahmberg posted a comment on discussion Open Discussion
How does MeV handle blank or NaN values when generating PCA or performing clustering?...
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Yuriy Gusev posted a comment on discussion Open Discussion
I have been experiencing similar problem - I have a 16Gb RAM in my desktop but I...
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S Granjeaud posted a comment on discussion Open Discussion
Hi, The order seems not to affect the "Original data". But, in Original Data / Sample...
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May be more information about your setup will help. Java 32bits or 64bits? Oracle...
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My solution is not perfect, but works. I unzipped the archive of Java3D and put the...
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The Web links seem to be broken. The documentation is in the documentation folder...
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The documentation is in the documentation folder of the ZIP file file you downloaded....
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I should have RTFM. OK, I will dive ;-)
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Hi, I am not using any annotation but I got the same warning. It looks like the DNA...
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pazit posted a comment on discussion Help
the MeV manual
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Thanks a lot. Any documentation about it?
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Howard Lin posted a comment on discussion Open Discussion
Hi, I am having this issue as well and I have seen quite a few other people having...
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rchang posted a comment on discussion Help
When I try to load my data, I keep getting the following error and in the file loader,...
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Hi, I am tring to perform hierarchical clustering on a very high number of features....
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Dear Sir/Madam I am currently using the MeV software to analyze my microarray data....
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Right click on the 3D view line on the tree to the right, then choose options, and...
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I am currently using the MeV software to analyze my microarray data. Some of the...
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Hi, The dots in the 3D view of PCA results are very small. In the publication of...
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MJonkman posted a comment on discussion Help
Hello! I'm (a bachelor student) quite new to Mev and I would like to preform a k-means...
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Sergio Lopez posted a comment on discussion Help
I have the same problem but with JAVA SE 8.25 and JAVA 3D 1.2.1 openGL instead.
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The documentation is in the documentation folder of the ZIP file file you downloaded....
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tap23 posted a comment on discussion Open Discussion
Hello, I am using a Linux machine to run MeV and I am trying to sort my samples in...
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Lucia Mattiello posted a comment on discussion Help
Hi John, the guick start is back online but the link to full manual is still broken.....
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I've been experiencing the same problem. Can anyone help us? Best!
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fanfan posted a comment on discussion Help
Hi! When I opened the MeV Manual to download the manual describing the workings of...
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Hi! When I opened the MeV Manual to download the manual describing the workings of...
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James K McCarthy posted a comment on discussion Help
In setting up whole (or partial) RNAseq (transcriptomic) experiments for analysis...
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Hi, I did an HCL then I clicked on nodes and defined different clusters (color+label...
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Hi, I already have such a problem. In my case the FTP is not reachable (too strong...
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Hi, I still can get the latest version of the manuals. Is there another place where...
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JPLaverdure posted a comment on discussion Help
Hello, I just downloaded the latest Linux version (4.8.1) and I suffer multiple problems:...
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Thanks, but they are still broken... does anyone have them?
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Hi, I still can get the latest version of the manuals. Is there another place where...
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Keerthi posted a comment on discussion Help
Hi, I got a similar error, when I tried EdgeR analysis for the test sample dataset....
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Hi, I have been trying to run MeV 4.8.1 for RNAseq analysis. I tried the TagSeqExample.txt...
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Thank you!
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Thanks for letting us know. We'll look into it and should have them back up soon....
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Hi, All links for manual (both quick start guide and full manual) downloads are broken....
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Ed Horton posted a comment on discussion Help
Hi I'm new to MeV. I downloaded Mev 4.9.0 today. It opens OK, but when I go to File,...
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hlwright posted a comment on discussion Help
I am having the same problem with MeV 4.8.1 in Mac OSX. Have used for some time but...
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Vincent posted a comment on discussion Help
I am using Mac OS 10.7.5 Mev version 4.8.1 JAVA 7u65. 8GB memory installed. I read...
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Andrew Maier posted a comment on discussion Help
We're trying to get MeV's 3d visualization working, but it doesn't look like it's...
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Craig Gedye posted a comment on discussion Help
Hi, I have used MeV intermittently in Mac OSX for some time, but for some reason...
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Shankara Pattabhiraman posted a comment on discussion Help
Hi, i use mev inubuntu 12.04 and have the same problem, do you have a fix for the...
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ELJ posted a comment on discussion Help
Dear User, I tried to create SOM using microarray expression dataset in MeV. I have...
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Qian jun posted a comment on discussion Help
I can't perform the edgeR analysis for RNA-Seq. At last, is showed "Analysis Error"....
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Thanks Lev. Sent from my iPhone On Apr 21, 2014, at 10:14 AM, "levk" levk80@users.sf.net...
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I held off on releasing 4.9 for Linux and Mac because Java 7 was not released yet...
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I held off on releasing 4.9 for Linux and Mac because Java 7 was not released yet...
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So as strangely as MeV stopped working for a couple of days, it is working just fine...
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Genome posted a comment on discussion Help
Thanks! And, for the record, I agree with jesse - MeV is really superb. I too have...
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Thanks as well for the report. We will try to sort out what is the source of the...
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Thanks for reporting this. We will look into it. JQ
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I have been having the same problem as of April 14th, using V4.8.1 in Ubuntu 12.04...
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I've been a loyal MeV user for almost seven years, but as of today, it has stopped...
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I've been a loyal MeV user for almost seven years, but as of today, it has stopped...
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Todd posted a comment on discussion Help
Just wanted to bump this post again to see if anyone else has encountered this issue...
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Hi, In my experience, the EWEIGHT line is not taken into account when clustering...
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Valery posted a comment on discussion Help
Hi Please any idea/suggestions about this problem: java.lang.ClassCastException:...
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Should be fixed now, sorry for the delay.
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Still getting this error almost five months later. Have a workshop coming up and...
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Daria Chrobok posted a comment on discussion Help
Thank you a lot for the fast answer! Especially for the according publication. Even...
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Daniel Schlauch posted a comment on discussion Help
A dendrogram from a hierarchical clustering analysis by default has an arbitrary...
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Hej everybody, I'm new in this forum & also quite a beginner in using the program...
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