Best Nonprofit Medical Billing Software
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Compare the Top Nonprofit Medical Billing Software as of January 2026
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What is Nonprofit Medical Billing Software?
Medical billing software helps healthcare providers manage the process of billing for medical services, ensuring accurate and timely payments from patients and insurance companies. These platforms typically include features for creating and submitting claims, tracking reimbursements, managing patient records, and ensuring compliance with healthcare regulations such as HIPAA. Medical billing software often integrates with electronic health record (EHR) and practice management systems, streamlining workflows and reducing the risk of errors. By using this software, healthcare providers can improve billing efficiency, reduce administrative costs, and ensure that claims are processed and paid accurately. Compare and read user reviews of the best Nonprofit Medical Billing software currently available using the table below. This list is updated regularly.
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1
RXNT
RXNT
RXNT is an ambulatory healthcare technology pioneer that empowers medical practices and healthcare organizations to succeed and scale through innovative, data-backed, AI-powered software. Our fully-integrated, ONC-certified suite of medical software—like Clinical EHRs, Practice Management, Medical Billing and RCM, E-Prescribing, Practice Scheduling, Patient Portal, and more—optimizes clinical outcomes and RCM for your practice. Used by tens of thousands of medical professionals—from large physician practices to medical billing companies—to drive growth, streamline business operations, and improve patient care across all 50 U.S. states. Our unified “Full Suite” system employs a secure, central database so your data passes through every product in real-time from anywhere, and more than 125 million prescriptions have been transmitted and over $7 billion in claims have been processed using RXNT.Starting Price: $118/month -
2
Service Center
Office Ally
Service Center by Office Ally is a trusted Revenue Cycle Management and patient payments platform used by more than 80,000 healthcare providers and health services organizations, which process more than 950 million transactions annually. Service Center is a cost-effective solution enabling providers to control their revenue cycle. With a user-friendly interface, Service Center helps providers check and verify patients’ eligibility and benefits, submit, correct, and check the status of their claims online, and receive remittance advice. Accepting standard ANSI formats, data entry and pipe-delimited formats, Service Center helps streamline administrative tasks and create more efficient workflows for providers.Starting Price: $0 -
3
Eldermark
Eldermark Software
Deliver a measurable ROI on workflow process improvements, revenue optimization, marketing and business development, and improved clinical outcomes. Seamlessly connect your entire community, empower your staff to work more efficiently, and generate a holistic view of your community’s financial performance to get the proactive insights you need to streamline your operations and optimize revenue. By centralizing all of your clinical and business operations onto one platform, you’ll give yourself the simplified solutions, economies of scale and enhanced security you need to become a world-class care provider. Gain better insight into your performance against your financial and occupancy goals, improve the safety and satisfaction of your residents and staff, and finally get ahead of the flood of issues you face every day.Starting Price: Contact us -
4
Ensora Mental Health
TheraNest
For solo and small-group mental health practice owners, TheraNest is the EHR and practice-management platform that simplifies clinical documentation, streamlines billing, and empowers sustainable practice growth without administrative headaches. Unlike SimplePractice and TherapyNotes, TherapyNotes uniquely allows therapists to run secure group telehealth sessions (up to 20 participants), automatically insert evidence-based Wiley® treatment plans, and access built-in flat-rate RCM services — all in one place. TheraNest gives therapists back time, control, and confidence by combining workflow automation, AI-enhanced documentation, and reliable U.S.-based support.Starting Price: $29 per month -
5
Elation Health
Elation Health
Billing and Practice Management: Supports claims processing, eligibility verification, customizable billing dashboards, code/charge entry, and analytics with over 100 available reports. -
6
XpertCoding
XpertDox
XpertCoding is an AI-powered medical coding software by XpertDox that uses advanced AI, natural language processing (NLP), and machine learning to code medical claims automatically within 24 hours. It automates the coding process, enabling faster and more accurate claims submissions to maximize financial gains for healthcare organizations. Features include minimal human supervision, easy EHR connectivity, flexible cost structure, a significant reduction in denials and coding costs, a HIPAA-compliant business intelligence platform, risk-free implementation with no initial fee and a free first month, and higher coding accuracy. XpertCoding's autonomous coding solution helps healthcare providers and organizations get paid faster, accelerating the revenue cycle and allowing them to focus on patient care. Opt for XpertCoding for a reliable and accurate medical coding software solution for your practice. -
7
Mercury One Plus
CrisSoft
Mercury One Plus is a Medical Practice Management solution that puts the fundamentals of Revenue Cycle Management at your fingertips; it acts as a stepping stone from standard billing to intermediate billing. Mercury One Plus is offered exclusively on the cloud, with the highest level of security- you can access your data anywhere 24/7. A complete product with big functionality, Mercury One Plus includes: patient demographics input, 100 plus reports to choose from, charge entry, full history of patient activity, ERA posting, credit card acceptance, and much more. Mercury Products are HIPAA compliant with a guaranteed connection to any clearinghouse or insurance company. Mercury One Plus's automated job system will facilitate a daily system tune-up: housecleaning; folder maintenance; daily backups; 837 exports; 835 imports;HL7. All subscriptions come with the expert help of CrisSoft Support. Willing to partner/intergrate with all EMR's through REST.Starting Price: $249.00 -
8
AZZLY
AZZLY
AZZLY Rize is the premier clinical and business platform for addiction treatment and mental health organizations. As an all-in-one substance use disorder and mental health specific EHR, Patient Engagement and RCM platform, we serve small, medium, and large clinics. Key features for OUTPATIENT Programs include: scheduling, appointment reminder, Zoom telehealth, treatment plans, progress notes, assessments and surveys. For RESIDENTIAL programs: census, medication management, bed board, withdrawal management, DrFirst e-prescribing, EPCS, PDMP, labs. For all levels of care: alerts, patient engagement portal, electronic billing and claims submission built in. AZZLY Rize empowers your staff through its 5 star training and support services, its simplicity and automation. As a true all-in-one EHR/PM/RCM platform, improved compliance, workflow and accurate billing are achieved real-time. We proudly serve programs in over 33 states and are hosted in Microsoft Azure's private cloud network.Starting Price: $50/user/month -
9
Foothold
Foothold Technology
Our human services software offers full functionality for case management, client tracking, electronic health record (EHR), and homeless information management (HMIS) all under one roof. We work with agencies across the spectrum of human services: including developmental disabilities, mental health, substance use disorder, homelessness, supportive housing, HCBS, and much more. Foothold is HIPAA-compliant mental health software, federally certified as an EHR, and offers full interoperability as you navigate the new landscape of care coordination and value-based care. Transform the way you provide care with nimble software and a partnership guided by experience. -
10
ReadySetConnect
ReadySetConnect
ReadySetConnect is a practice management software. It is designed to be a complete support tool for clinicians and educators so they can perform their work efficiently and dependably. All patient charts are in one place and can be accessed easily. Users can track and review progress on goals, compare data, collaborate and make timely and effective decisions that help them succeed. This easy-to-set-up software solution is HIPAA-compliant. Unite Your Team: Access ReadySetConnect from any device to meet unique challenges faced by your team and enhance productivity. Effectively Supervise Clinicians And Assistants: In-built workflow enables easy access to review caseloads, schedules, records, and interactions. Collaborate And Gain Confidence With Your Shareholders: Dynamic access rights for your payors and clients to share data in real-time. Make Better-Informed Decisions: Data helps review and analyze each team's performance and inform future planning.Starting Price: Free -
11
Behave Health
Behave Health
The Behave Health solution combines best-in-class electronic health records software with integrated medical billing & revenue cycle management software. We simplify your operations so you can focus on providing high quality patient care. We support facilities across the behavioral health continuum of care; outpatient, residential, and inpatient. We can support facility providers treating patients with addiction/substance use disorders and mental health disorders. Our solution is perfect for new facilities just starting up or existing facilities looking for a trusted software partner. We know you will love our software so we give you a free trial account to try it out yourself! -
12
Speedy Claims
SpeedySoft
Speedy Claims became the top CMS-1500 Software by providing the best customer service imaginable to our thousands of clients all over America. Medical billing isn't the kind of thing most people get excited about - it is just a tedious task you have to do. But while it will never be a fun task, it doesn't have to be as difficult or time consumimg as it is now. With Speedy Claims CMS-1500 software you can get the job done quickly and easily, allowing you to focus on the things you love about your job, like helping patients. With a simple interface, powerful features to eliminate repetitive work, and unrivaled customer support, it's simply the best HCFA 1500 software available on the market. A powerful built-in error checking helps ensure your HCFA 1500 form is complete and correctly filled out, preventing CMS-1500 claims from being denied.Starting Price: $29.95 per user per month -
13
Raintree
Raintree Systems
Running a successful therapy & rehab organization takes dedication, effort, and time. Hours spent on administrative tasks, billing, and planning can add up quickly, leaving you with little time to focus on the most important aspects of your practice. Taking on an Electronic Medical Records (EMR) system can help alleviate some of the burden and make the management of your practice more efficient. Raintree's EMR is the perfect solution for streamlining your practice's administrative duties while allowing you to focus on providing quality care to your clients. With Raintree's EMR, you can easily manage patient information and data, quickly generate reports, and easily access patient records. With our all-in-one solution, you’ll get the tools you need to streamline your therapy and rehab practice, improve patient care, and get back to doing what you love. Our electronic medical records solution is the most comprehensive and user-friendly EMR on the market. -
14
OpenPM
OpenPractice
Open Practice is pleased to present OpenPM, our cloud-based RCM platform that has propelled the company through 17 consecutive years of double-digit growth. OpenPM connects all the disparate elements of the revenue cycle including; Scheduling & Registration, Billing, Clearinghouse, and Patient Payments/Collections. The result is highly automated accounts receivables management for optimized cash flow, and extensive reporting to help you proactively manage your organization. All of this control is securely hosted and delivered through the browser you already have, providing the perfect combination of security and availability. Medical billing software, revenue cycle management solutions, practice management software, practice management system, medical practice management, EMR integration, EHR integration, practice management scheduling, patient scheduling, online patient billing, patient billing, automatic patient billing and payments, patient payments, electronic patient payments. -
15
Zanda
Zanda Health
Zanda (formerly Power Diary) is the online practice management software trusted by health practitioners worldwide. It includes calendar management, appointment reminders (SMS + email), customisable treatment note templates, client invoicing & payments, online bookings, 2-way SMS chat, Telehealth, an in-platform practice operations manual, and a lot more! Plus, it integrates with Xero, Mailchimp, Stripe, Physiotrack, Medicare (AU) and other systems. Zanda clients range from sole practitioners to large, multi-location practices and are typically physiotherapists, psychologists, speech therapists, podiatrists, massage therapists, naturopaths, osteopaths, chiropractors, or counsellors, etc. Zanda offers a 12-month Money-Back Guarantee to help make the decision easier. They also provide very high-quality support and will manage the import of your data for you.Starting Price: $9.50/month/practitioner -
16
Healthicity Audit Manager
Healthicity
For medical auditing, Audit Manager streamlines the way you manage audits by merging audit workflow, management, education, and reporting into one easy-to-use, web-based solution. Audit Manager brings simplicity by helping you: Identify Revenue Evaluate financial impact. Minimize denials and identify up to 10%, per provider, in missed revenue with extensive reporting and analytics tools. Increase Efficiency Improve your auditing efficiency by up to 40%. Reduce the amount of time you spend completing audits with our user-friendly interface. Improve Accuracy Customize your audit templates. Include your own standards, MAC carrier guidelines, and claim scrubber tech for ideal results. Audit Manager features: Built-in Tableau integration for in-depth analytics and reporting. Flexible Audit Management: View the status, and each associated status, of every audit, by any auditor. E/M Calculator Automatically calculate E/M codes with a built-in calculator.Starting Price: $670/mo for 3 users -
17
OptiMantra
OptiMantra
OptiMantra is an EMR and practice management platform focused on helping integrative and wellness practices. It serves individual and multi-modality group practices of direct and primary care providers, acupuncturists, nurse practitioners, naturopaths, chiropractors, massage therapists, PTs, dieticians and nutritionists, aesthetics, and others across the US and Canada. It is a HIPAA and PHIPA-compliant platform and is highly adaptable and robust - it includes online appointment booking, patient messaging and email reminders, a patient portal, intake forms and customizable charting, integrated payment processing, integrated labs and imaging, insurance billing, in-program tele-health, inventory management, and more. The platform is cloud-based and accessible and usable via any desktop, laptop, tablet or phone with internet access.Starting Price: $99 per month -
18
PlanStreet
PlanStreet
No matter the size of your organization, our software has everything you need to manage and accelerate your performance. Our secure and scalable case management software has the flexibility to support your client’s needs and empower your agency. HIPAA and HITRUST security standard compliance ensure that your sensitive data and files are secure with PlanStreet. It is time to abandon manual forms and processes. Switch to PlanStreet and automate your client engagement, cases, forms, and files. We’re positive PlanStreet will help you and your team(s) plan, execute, and track work. We are confident that our case management software is the tool your health and human services team needs to get to the next level. Please contact us to schedule a free demo and to learn more about our unique approach to case management.Starting Price: $100/user/month -
19
iCareBilling
iCareBilling
iCareBilling is an American Healthcare IT Company that provides Medical Billing, Practice Management, and RCM Software and Services to independent healthcare providers, small, medium, and large medical practices, medical groups, and hospitals throughout the United States. iCareBilling Practice Management Software and RCM Services can be integrated with any EHR/EMR, Practice Management, or Medical Billing Software with any healthcare EDI vendor/clearinghouse in the U.S. healthcare industry. iCareBilling offers integration with all leading EHRs/EMRs in the U.S. Healthcare industry and where EHR/EMR vendor doesn't offer integration, manual workflow is available to take out the patient non-clinical information to submit the claim and receive payments on the behalf of healthcare providers.Starting Price: $450 per month -
20
EHR 24/7®
Office Ally
EHR 24/7 by Office Ally is a trusted electronic health record system used by more than 20,000 users. Its comprehensive patient charting and document management, real-time patient information, and customizable forms provide healthcare providers with an intuitive interface to manage patient care. By using EHR 24/7, providers can improve communication and collaboration between providers, leading to more accurate diagnoses and fewer errors. Its seamless integration with other Office Ally solutions also provides additional functionality such as patient intake, electronic prescription, etc. With no needed implementation, healthcare providers can use EHR 24/7 to treat and document patients today.Starting Price: $44.95 per month -
21
CureMD
CureMD
Transform your practice with CureMD's cloud-based Electronic Health Record in a way you never imagined before. With a powerful knowledge base, CureMD is built for usability, performance, and reliability. It delivers advanced features, previously available in systems costing thousands of dollars, at a fraction of the cost. Version 10g includes an iPad app that works delightfully. It is intuitive, simple, and enjoyable. You have complete access to your appointments, clinical reviews, patient notes, medical histories, and document manager - all bundled in one app. Integrated access across patient demographics, scheduling, electronic billing, administrative/financial reporting and workflow management connects front and back office operations, improves productivity eliminates reimbursement delays and communication barriers.Starting Price: $295 per month -
22
OmniMD
OmniMD
With over two decades of unparalleled expertise in revolutionizing healthcare, OmniMD stands as a catalyst in reshaping traditional care models into dynamic, AI-enabled digital health platforms. As a globally recognized, AI-driven organization, we deliver integrated solutions that ensure seamless interoperability, encompassing a portfolio of over 18 products (EHR, PMS, RCM, and more) thoughtfully customized to meet the unique and evolving needs of more than 20 specialties (Cardiology, urgent care, primary care, internal medicine, psychiatry, pediatrics, etc.). Harnessing the potential of advanced cloud architectures and next-generation digital health platforms, our innovations are widely appreciated for enhancing patient engagement, expanding access to remote care, and supporting data-driven healthcare delivery through Health Portals, Remote Patient Monitoring (RPM), Patient Kiosks, and Telehealth services.Starting Price: $250.00/month/user -
23
MediMobile
MediMobile
We help you reach your goals to reduce costs, deliver improved clinical outcomes, reducing readmission rates, and increase revenue. Grow your revenue with mobile charge capture, clinical documentation, medical billing, and maximizing revenue collection using our cutting-edge technology specially designed for healthcare providers. MediMobile® allows you set up your rounding and appointments in advance or on the fly using your handheld device or any web browser. Set up your rounds and appointments by location, date, room number, name etc. as well as collaborate with other providers within your practice. Customizable to meet your preferences. MediMobile® offers a variety of reporting options to meet the needs of the most novice user or the most advanced number cruncher. MediMobile’s® smart technology integration engine enables real-time integrations with hospital systems, patient management, and billing solutions.Starting Price: Free -
24
QBILLY
QBILLY
Our cloud-based AP software automates invoice processing and enhances your existing accounts payable financial software to create a seamless platform that allows your accounts payable department personnel to work from anywhere, remotely or in the office, without purchasing expensive accounting software. QBILLY provides a secure, simple, and cloud-based AP add-on solution for receiving, tracking, routing, approving, archiving, and paying vendor invoices while integrating with most accounting software systems. Our software provides you with wizards to easily configure the system to work the way you want it to work. Also, our software allows you to connect your financial stakeholders to AP information with a cost effective and flexible solution that is accessible from anywhere and from any device. This software will eliminate manual processes to reduce the number of accounting errors and allowing you to become more productive, reduce costs, and go paperless.Starting Price: $14.99 per month -
25
Sehat Central HMIS
Cottonsoil Healthcare Tech
Sehat Central HMIS is a unique, standardized, intelligent, secure, cloud-based platform for healthcare professionals that enables streamlining the practice workflow at Hospitals, Clinics, Labs and Diagnostics Centers. Complete seamless integration of OPD, IPD, Lab, Pharmacy, Radiology departments. We know that most practitioners would love to adopt the new-age technology but are apprehensive of the complex technology that they don't understand fully. We understand these apprehensions of practitioners and hence our efforts are focused on making the solution intuitive that aligns seamlessly with the workflow at your practice. Sehat Central HMIS is a cloud-based, standardized, integrated healthcare platform. It provides a user-friendly interface to enable digitization and automation of end-to-end workflows in clinics and hospitals of all sizes.Starting Price: INR 30,000 -
26
MAPay
MAPay
MAPay is a decentralized payment network solution that provides increased security while lowering transaction costs and improving payment performance for a multitude of industry stakeholders. MAPay, a global healthcare technology firm, has deployed a platform agnostic transformational healthcare payment network. The Company is poised to be the industry leader in healthcare payment processing. The current landscape of healthcare is often a zero-sum game in which misaligned incentives, a lack of transparency in billing & pricing, and non-interoperable systems drive up the cost of care, while often driving down the quality of care. The Network is resolving new use cases every day among healthcare systems, government entities, medical apps and medical corporate care. Challenge us with yours. The backbone of the network utilizes a hybrid architecture of distributed ledger technology, traditional database and payment processing. -
27
MedHeave
MedHeave
MedHeave is a Massachusetts based Medical Billing Solution Provider, offering services all over the US. We have years of experience reducing medical staff’s administrative workload. We handle billing, coding, A/R services, medical credentialing, etc. Our medical billing specialists care for your paperwork and let you give your best when treating your patients. Nothing gets better than treating your patients without stress while we make your revenue cycle management neat. -
28
eClinicalWorks
eClinicalWorks
Patient medical record retrieval is just a search away. The PRISMA health information search engine is here to bring together medical records from primary care providers, specialists, clinics, urgent care centers, and hospitals to create a searchable, timeline view of a patient’s health history. Our Customer Success Stories illustrate real-world applications of our healthcare IT. See how eClinicalWorks customers are achieving value-based care and improving healthcare. At eClinicalWorks, we are 5,000 employees dedicated to improving healthcare together with our customers. More than 130,000 physicians nationwide — and more than 850,000 medical professionals around the globe — rely upon our EHR software for comprehensive clinical documentation, along with solutions for telehealth, Population Health, Patient Engagement, and Revenue Cycle Management. Privately held, and driven by innovation and excellence, we have a single focus — providing our customers with secure, cloud-based solutions.Starting Price: $499.00/month/user -
29
Availity
Availity
Collaborating for patient care requires constant connectivity and up-to-date information. Simplifying how you exchange that information with your payers is more important than ever. Availity makes it easy to work with payers, from the first check of a patient’s eligibility through final resolution of your reimbursement. You want fast, easy access to health plan information. With Availity Essentials, a free, health-plan-sponsored solution, providers can enjoy real-time information exchange with many of the payers they work with every day. Availity also offers providers a premium, all-payer solution called Availity Essentials Pro. Essentials Pro can help enhance revenue cycle performance, reduce claim denials, and capture patient payments. Availity remains your trusted source of payer information, so you can focus on patient care. Our electronic data interchange (EDI) clearinghouse and API products allow providers to integrate HIPAA transactions and other features into their PMS. -
30
SimplePractice
SimplePractice
SimplePractice is a comprehensive electronic health record (EHR) and practice management software tailored for health and wellness professionals. Serving over 225,000 practitioners, it offers features such as integrated telehealth, customizable documentation templates, billing and insurance tools, and a secure client portal. Designed to streamline administrative tasks, SimplePractice enhances client care and supports the growth of private practices. Starting Price: $35.00/month/user
