Package: skimage / 0.18.1-2

Metadata

Package Version Patches format
skimage 0.18.1-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
fix documentation links.patch | (download)

doc/source/_templates/navbar.html | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 fix documentation links

change to absolute filesystem links

Avoid privacy breach.patch | (download)

doc/source/themes/scikit-image/layout.html | 3 1 + 2 - 0 !
1 file changed, 1 insertion(+), 2 deletions(-)

 avoid privacy breach

use standard fonts instead of loading something from google
use local jquery from sphinx

Skip failing test on big endian architectures.patch | (download)

skimage/io/tests/test_pil.py | 3 3 + 0 - 0 !
1 file changed, 3 insertions(+)

 skip failing test on big endian architectures


Allow warnings on dask.patch | (download)

skimage/restoration/tests/test_denoise.py | 1 1 + 0 - 0 !
1 file changed, 1 insertion(+)

 allow warnings on dask


Don t download intersphinx mapping.patch | (download)

doc/source/conf.py | 10 5 + 5 - 0 !
1 file changed, 5 insertions(+), 5 deletions(-)

 don't download intersphinx mapping


Disable numpy matrix deprecation warnings.patch | (download)

skimage/segmentation/tests/test_random_walker.py | 5 1 + 4 - 0 !
1 file changed, 1 insertion(+), 4 deletions(-)

 disable numpy matrix deprecation warnings

Numpy matrix deprecation warnings are disabled by python-scipy 1.1.0-4,
so we shall make sure that the tests don't fail then.

Closes: #924606

Disable test that requires local server.patch | (download)

skimage/io/tests/test_io.py | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 disable test that requires local server

While the required package (python3-pytest-localserver) is available
on Debian, this test fails during the startup of the localserver:

```
skimage/io/_io.py:47: in imread
    with file_or_url_context(fname) as fname:
/usr/lib/python3.8/contextlib.py:113: in __enter__
    return next(self.gen)
skimage/io/util.py:28: in file_or_url_context
    u = urllib.request.urlopen(resource_name)
/usr/lib/python3.8/urllib/request.py:222: in urlopen
    return opener.open(url, data, timeout)
/usr/lib/python3.8/urllib/request.py:525: in open
    response = self._open(req, data)
/usr/lib/python3.8/urllib/request.py:542: in _open
    result = self._call_chain(self.handle_open, protocol, protocol +
/usr/lib/python3.8/urllib/request.py:502: in _call_chain
    result = func(*args)
/usr/lib/python3.8/urllib/request.py:1348: in http_open
    return self.do_open(http.client.HTTPConnection, req)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = <urllib.request.HTTPHandler object at 0x7fabb4e020a0>
http_class = <class 'http.client.HTTPConnection'>
req = <urllib.request.Request object at 0x7fabb463b0d0>, http_conn_args = {}
host = '127.0.0.1:9', h = <http.client.HTTPConnection object at 0x7fabb463b2b0>

    def do_open(self, http_class, req, **http_conn_args):
        [...]
        try:
            try:
                h.request(req.get_method(), req.selector, req.data, headers,
                          encode_chunked=req.has_header('Transfer-encoding'))
            except OSError as err: # timeout error
>               raise URLError(err)
E               urllib.error.URLError: <urlopen error [Errno 111] Connection refused>
```

Don t include links to other versions.patch | (download)

doc/source/_templates/versions.html | 4 0 + 4 - 0 !
1 file changed, 4 deletions(-)

 don't include links to other versions

See https://github.com/scikit-image/scikit-image/issues/4603

Closes: #955068

Disable binder reference.patch | (download)

doc/source/conf.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 disable binder reference


Include everyting from the data subdir.patch | (download)

setup.cfg | 3 3 + 0 - 0 !
1 file changed, 3 insertions(+)

 include everyting from the data subdir


Skip tests that need the python3 pooch package and intern.patch | (download)

skimage/data/tests/test_data.py | 1 1 + 0 - 0 !
skimage/restoration/tests/test_rolling_ball.py | 1 1 + 0 - 0 !
2 files changed, 2 insertions(+)

 skip tests that need the python3-pooch package and internet
 connection

python3-pooch is not available yet (RFS #968470)

Replace myst parser by recommonmark.patch | (download)

doc/source/conf.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 replace myst-parser by recommonmark

myst-parser is not available in Debian

Allow either SyntaxError or OSError for the truncated JPG.patch | (download)

skimage/io/tests/test_imageio.py | 4 3 + 1 - 0 !
1 file changed, 3 insertions(+), 1 deletion(-)

 allow either syntaxerror or oserror for the truncated jpg exception

URL: https://github.com/scikit-image/scikit-image/pull/5315
Closes: #990204