Acsomega 1c00543
Acsomega 1c00543
org/journal/acsodf Article
tion at the Lewis acid center may be an interesting alternative to stabilize these complexes.
Detailed bonding analyses reveal the formation of two-center−two-electron dative bonding, where
Ng atoms act as a donor.
■ INTRODUCTION
Noble gases (Ng) having a complete outer electronic shell exist
actions without the use of steric protection? Is it possible for
the noble gases to form a usual two-center−two-electron
bond? To answer these questions, we have carried out
as individual atoms. They are not likely to be involved in
quantum chemical calculations on donor−acceptor complexes
chemical bonding. Extreme conditions such as strong oxidizing
between noble gases and group 13 elements (Scheme 1). The
agents, such as F2, or extreme activation by laser irradiation,
electric discharge, etc. are required, and the products are
trapped in low-temperature matrices. After the first synthesis of Scheme 1. Pyramidal Lewis Acidic Boron Centers
Considered in This Study
xenon compounds by Bartlett1 and Hoppe2 in 1962, many
compounds featuring Ng−X (X = halogen, oxygen, sulfur,
nitrogen, and carbon) bonds have been isolated and
characterized.3 The chemistry of krypton and other noble
gases has been thoroughly reviewed.4−6
Noble-gas compounds are generally metastable and readily
dissociate into their atomic form. The bonding situation in the
stable compound, NgF2, is described as three-center−four-
electron bonds,7 where terminal fluorine atoms also participate
in the bond formation. Similar bonding situation has also been
described in Au+−Ng−F−.8 The other possibility of three-
center−four-electron bond formation is through donor−
acceptor interaction, as pointed by Mück et al.9 Such a
bonding situation can describe the experimentally synthesized bond dissociation energies (BDEs) of BH3−Ng complexes are
very low, which might be due to the requirement of large
compounds such as HArF10 and HKrF,11 which were prepared
preparation energy by planar boron acceptors to achieve
by the photolysis of HF in argon and krypton matrices.
pyramidal conformation upon complexation with noble gases.
However, calculations reveal that both HArF and HKrF
We, therefore, envisioned that prepyramidalized boron center
molecules are metastable due to exothermic dissociation into
(B1−B8, Scheme 1) will be effective to stabilize such donor−
free Ng and HF.12 To overcome the problem of dissociation,
acceptor complexes. It should be noted that Mück et al. have
Mück et al. have theoretically proposed the use of a rigid cage,
also used a prepyramidalized acceptor center in their study.9
such as a push−pull cryptand ligand, which contains both
donor (D) and acceptor (A) sites.9 Their calculations reveal
that the dissociation process, A−Ng−D = Ng + AD (A = Received: January 29, 2021
acceptor and D = donor), is endergonic (ΔG > 0), indicating Accepted: March 5, 2021
that the cryptand-encapsulated noble-gas compounds are Published: March 16, 2021
thermodynamically stable.
Is there a possibility of formation of thermodynamically
stable noble-gas compounds featuring donor−acceptor inter-
© 2021 The Authors. Published by
American Chemical Society https://doi.org/10.1021/acsomega.1c00543
8656 ACS Omega 2021, 6, 8656−8661
ACS Omega http://pubs.acs.org/journal/acsodf Article
Figure 1. BP86-D3(BJ)/def2-TZVPP optimized geometries of the donor−acceptor complexes. Bond lengths are in Å. Values in italics refer to the
BP86/def2-TZVPP level.
Table 1. Wiberg Bond Index (WBI), Force Constant (k in mDyne Å−1), Difference in Pyramidalization Angle at B (ΔθB, in
Degrees), and Bond Dissociation Energies (kJ mol−1) of the Donor−Acceptor Complexesa
molecule bond wib force constant (k) difference (ΔθB) BDE
B1−X B−Ar 0.071 0.0281 0.6 5.8
B−Kr 0.134 0.0234 1.5 9.6
B−Xe 0.240 0.0312 3.3 16.7
B2−X B−Ar 0.078 0.0172 0.9 6.2
B−Kr 0.134 0.0257 1.5 10.4
B−Xe 0.253 0.0230 2.7 18.4
B3−X B−Ar 0.071 0.0262 0.6 6.7
B−Kr 0.134 0.0177 1.2 10.4
B−Xe 0.221 0.0107 2.4 18.0
B4−X B−Ar 0.086 0.0350 0.6 7.5
B−Kr 0.145 0.0238 1.2 11.7
B−Xe 0.284 0.0343 2.9 20.0
B5−X B−Ar 0.053 0.0251 0.6 4.4
B−Kr 0.083 0.0189 0.9 6.2
B−Xe 0.137 0.0194 1.5 10.0
B6−X B−Ar 0.049 0.0322 0.1 5.8
B−Kr 0.085 0.0247 0.2 9.2
B−Xe 0.167 0.0242 1.2 15.9
B7−X B−Ar 0.395 (0.381) 0.314 (0.237) 9.9 (9.9) 20.0 (8.3)
B−Kr 0.536 (0.516) 0.445 (0.362) 12.9 (12.9) 35.9 (21.0)
B−Xe 0.667 (0.650) 0.512 (0.443) 15.9 (15.9) 61.5 (40.9)
B8−X B−Ar 0.226 (0.125) 0.099 (0.025) 6.0 (3.3) 9.6 (0.5)
B−Kr 0.397 (0.362) 0.206 (0.162) 10.5 (9.9) 21.7 (6.5)
B−Xe 0.591 (0.566) 0.557 (0.454) 15.3 (15.3) 44.3 (22.8)
a
Values within parentheses refer to the BP86/def2-TZVPP level.
The strategy of using prepyramidalized boron center has been metal boron donor−acceptor complexes.13 Recently, our group
utilized by Borthakur et al. in stabilizing unsupported transition has reported pyramidal tricoordinate boron centers (B7−B8,
8657 https://doi.org/10.1021/acsomega.1c00543
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ACS Omega http://pubs.acs.org/journal/acsodf Article
■ COMPUTATIONAL DETAILS
All of the structures were fully optimized without any
symmetry constraints at the BP86-D3(BJ)/def2-TZVPP
level.16 This theory includes third generation of Grimme’s
Figure 3. (a) Bonding molecular orbital of the complexes featuring
empirical dispersion with the Becke−Johnson damping Ng → B dative bond and (b) density difference plot of the donor−
function.17 This method is known to produce very good acceptor adducts (red = density increment, blue = density depletion).
geometries, and the dispersion correction produces bond
dissociation energies with least mean deviation.18 Harmonic Table 2. Charge Decomposition Analysis (CDA) Results of
frequency calculations were also performed to understand the the Adductsa
nature of the stationary state. All structures were found to be at
their local minima with all real values of the Hessian matrix. All molecules donation (d) repulsion (r) residue (Δ) |q|
of these calculations were performed using the GAUSSIAN 16 B1−Ar 0.032 −0.304 −0.020 0.043
suite of program.19 All energies are zero-point- and thermal- B1−Kr 0.021 −0.301 −0.021 0.083
corrected. Basis set superposition error (BSSE) is not B1−Xe 0.011 −0.307 −0.023 0.154
considered as it is reported that while using DFT-D methods B2−Ar 0.042 −0.303 −0.019 0.049
with triple zeta quality basis set, BSSE correction can be B2−Kr 0.016 −0.311 −0.021 0.084
avoided.20 The electronic structures of these molecules were B2−Xe 0.021 −0.308 −0.021 0.166
analyzed using natural bond orbital (NBO) analyses,21 B−Ar 0.039 −0.309 −0.020 0.044
quantum theory of atoms in molecules (QTAIM),22 and B3−Kr 0.034 −0.301 −0.023 0.078
electron localization function (ELF)23 at the BP86-D3(BJ)/ B3−Xe 0.012 −0.302 −0.018 0.143
def2-TZVPP level. QTAIM and ELF analyses were performed B4−Ar 0.043 −0.303 −0.019 0.054
using Multiwfn program code.24 Charge decomposition B4−Kr 0.039 −0.313 −0.021 0.091
analysis (CDA)25 was performed using Multiwfn program B4−Xe 0.023 −0.304 −0.024 0.187
code. The force constant k was calculated using the compliance B5−Ar 0.029 −0.306 −0.020 0.033
program code.26 B5−Kr 0.024 −0.307 −0.022 0.053
To investigate the effect of dispersion on the molecular B5−Xe 0.017 −0.303 −0.021 0.089
geometry, bond dissociation energy, and electronic structure, B6−Ar 0.022 −0.304 −0.018 0.033
some of the molecules were optimized at BP86 functional B6−Kr 0.015 −0.301 −0.019 0.058
without D3 correction. B6−Xe 0.020 −0.310 −0.020 0.117
■
B7−Ar 0.147 −0.300 −0.002 0.273
RESULTS AND DISCUSSION B7−Kr 0.175 −0.311 −0.001 0.387
B7−Xe 0.210 −0.301 −0.002 0.507
Figure 1 shows the optimized geometries of the donor− B8−Ar 0.094 −0.310 −0.013 0.158
acceptor complexes. Lighter noble gases He and Ne form very B8−Kr 0.136 −0.305 −0.011 0.285
B8−Xe 0.186 −0.306 −0.010 0.446
a
Here, donation means donation from Ng to empty orbital of B. The
magnitude of charge transfer |q| is also tabulated. Back-donation from
BR3 fragment to Ng gases is zero in all cases.
Figure 4. (a) Laplacian plot of electron density (red = charge concentration, blue = charge depletion) and (b) electron localization function in the
P−B−Xe plane of the B7−Xe molecule.
Table 3. Calculated Electron Density ρ, Laplacian of Electron Density ∇2ρ, Local Electronic Energy Density H(r), and ELF
Values at the B−Ng Bond Critical Pointa
molecule bond ρ ∇2ρ H(r) ELF
B1−X B−Ar 0.010 0.029 −0.001 0.051
B−Kr 0.015 0.030 −0.002 0.101
B−Xe 0.021 0.028 −0.002 0.198
B2−X B−Ar 0.011 0.031 −0.001 0.052
B−Kr 0.015 0.031 −0.002 0.095
B−Xe 0.022 0.029 −0.002 0.197
B3−X B−Ar 0.010 0.030 −0.001 0.048
B−Kr 0.014 0.031 −0.000 0.088
B−Xe 0.019 0.028 −0.001 0.172
B4−X B−Ar 0.012 0.032 −0.003 0.058
B−Kr 0.016 0.032 −0.003 0.103
B−Xe 0.024 0.029 −0.003 0.225
B5−X B−Ar 0.009 0.024 −0.002 0.043
B−Kr 0.011 0.024 −0.001 0.075
B−Xe 0.014 0.021 −0.002 0.144
B6−X B−Ar 0.007 0.021 −0.002 0.035
B−Kr 0.010 0.023 −0.003 0.064
B−Xe 0.014 0.024 −0.003 0.139
B7−X B−Ar 0.047 (0.045) 0.029 (0.028) −0.022 (−0.019) 0.262 (0.268)
B−Kr 0.057 (0.054) 0.004 (0.004) −0.032 (−0.028) 0.342 (0.358)
B−Xe 0.065 (0.062) −0.030 (−0.026) −0.037 (−0.033) 0.516 (0.526)
B8−X B−Ar 0.029 (0.017) 0.040 (0.035) −0.005 (−0.000) 0.218 (0.107)
B−Kr 0.043 (0.039) 0.018 (0.023) −0.014 (−0.011) 0.385 (0.361)
B−Xe 0.058 (0.054) −0.014 (−0.007) −0.026 (−0.022) 0.552 (0.545)
a
All bond critical point values are in au. Values within parentheses refer to the BP86/def2-TZVPP level.
stronger than the rest. Dispersion plays a major role in these donor−acceptor complexes. The WBI values as well as the
molecules as evident from Figure 1 and Table 1. Pure BP86/ force constant values increase from Ar to Xe. Similarly, the
def2-TZVPP without D3 correction resulted in longer B−Ng bond dissociation energy (BDE) values also increase from Ar
bonds with lower bond dissociation energies for B7 and B8 to Xe. The lowest BDE value is found for the B5−Ar complex,
molecules. while the highest value is found for the B7−Xe complex,
The bond strengths are measured in terms of their Wiberg reaching a maximum value of 61.5 kJ mol−1. There is a
bond indices (WBI) as well as their force constant, k, values. dramatic increase in WIB, k, and BDE for the complexes with
Table 1 contains some important numerical data of the B7 and B8. The increase in all of these parameters with B7 and
8659 https://doi.org/10.1021/acsomega.1c00543
ACS Omega 2021, 6, 8656−8661
ACS Omega
■
http://pubs.acs.org/journal/acsodf Article
assistance in the form of a project (Project no. ECR/2016/ (16) (a) Becke, A. D. Density-functional exchange-energy
001466). approximation with correct asymptotic behavior. Phys. Rev. A 1988,
■
38, 3098−3100. (b) Perdew, J. P. Density-functional approximation
REFERENCES for the correlation energy of the inhomogeneous electron gas. Phys.
Rev. B 1986, 33, 8822−8824.
(1) Bartlett, N. Xenon hexafluoroplatinate (V) Xe+[PtF6]−. Proc. (17) (a) Becke, A. D.; Johnson, E. R. A density-functional model of
Chem. Soc. 1962, 197−236. the dispersion interaction. J. Chem. Phys. 2005, 123, 154101−154109.
(2) Hoppe, R.; Dähne, W.; Mattauch, H.; Rödder, K. M. (b) Johnson, E. R.; Becke, A. D. A post-Hartree−Fock model of
Fluorination of xenon. Angew. Chem., Int. Ed. 1962, 1, No. 599. intermolecular interactions. J. Chem. Phys. 2005, 123, 024101−
(3) (a) Greenwood, N. N.; Earnshaw, A. Chemistry of the Elements; 024107. (c) Johnson, E. R.; Becke, A. D. A post-Hartree-Fock model
Butterworth-Heinmann: Oxford, 2001; p 888. (b) Frohn, H. J.; of intermolecular interactions: Inclusion of higher-order corrections. J.
Bardin, V. V. Preparation and reactivity of compounds containing a Chem. Phys. 2006, 124, 174104−174109.
carbon-xenon bond. Organometallics 2001, 20, 4750. (c) Pettersson, (18) Hirao, H. Which DFT Functional Performs Well in the
M.; Lundell, J.; Khriachtchev, L.; Isoniemi, E.; Räsänen, M. HXeSH, Calculation of Methylcobalamin? Comparison of the B3LYP and
the First Example of a Xenon−Sulfur Bond. J. Am. Chem. Soc. 1998, BP86 Functionals and Evaluation of the Impact of Empirical
120, 7979. (d) Khriachtchev, L.; Tanskanen, H.; Lundell, J.; Dispersion Correction. J. Phys. Chem. A 2011, 115, 9308−9313.
Pettersson, M.; Kiljunen, H.; Räsänen, M. Fluorine-Free Organo- (19) Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.;
xenon Chemistry: HXeCCH, HXeCC, and HXeCCXeH. J. Am. Chem. Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Petersson,
Soc. 2003, 125, 4696. (e) Khriachtchev, L.; Isokoski, K.; Cohen, A.; G. A.; Nakatsuji, H.; Li, X.; Caricato, M.; Marenich, A. V.; Bloino, J.;
Räsänen, M.; Gerber, R. B. A Small Neutral Molecule with Two Janesko, B. G.; Gomperts, R.; Mennucci, B.; Hratchian, H. P.; Ortiz, J.
Noble-Gas Atoms: HXeOXeH. J. Am. Chem. Soc. 2008, 130, 6114. V.; Izmaylov, A. F.; Sonnenberg, J. L.; Williams-Young, D.; Ding, F.;
(4) Lehmann, J. F.; Mercier, H. P. A.; Schrobilgen, G. J. The Lipparini, F.; Egidi, F.; Goings, J.; Peng, B.; Petrone, A.; Henderson,
chemistry of krypton. Coord. Chem. Rev. 2002, 233−234, 1−39. T.; Ranasinghe, D.; Zakrzewski, V. G.; Gao, J.; Rega, N.; Zheng, G.;
(5) Gerber, R. B. Formation of novel rare-gas molecules in low- Liang, W.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.;
temperature matrices. Annu. Rev. Phys. Chem. 2004, 55, 55−78. Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Vreven, T.;
(6) Grochala, W. Atypical compounds of gases, which have been Throssell, K.; Montgomery, J. A., Jr.; Peralta, J. E.; Ogliaro, F.;
called ‘noble’. Chem. Soc. Rev. 2007, 36, 1632. Bearpark, M. J.; Heyd, J. J.; Brothers, E. N.; Kudin, K. N.; Staroverov,
(7) Collins, G. A. D.; Cruickshank, D. W. J.; Breeze, A. Bonding in V. N.; Keith, T. A.; Kobayashi, R.; Normand, J.; Raghavachari, K.;
krypton difluoride. J. Chem. Soc., Faraday Trans. 1974, 70, 393. Rendell, A. P.; Burant, J. C.; Iyengar, S. S.; Tomasi, J.; Cossi, M.;
(8) (a) Belpassi, L.; Infante, I.; Tarantelli, F.; Visscher, L. The Millam, J. M.; Klene, M.; Adamo, C.; Cammi, R.; Ochterski, J. W.;
Chemical Bond between Au(I) and the Noble Gases. Comparative Martin, R. L.; Morokuma, K.; Farkas, O.; Foresman, J. B.; Fox, D. J..
Study of NgAuF and NgAu+ (Ng = Ar, Kr, Xe) by Density Functional Gaussian 16, revision A.03; Gaussian, Inc.: Wallingford, CT, 2016.
and Coupled Cluster Methods. J. Am. Chem. Soc. 2008, 130, 1048. (20) Boys, S. F.; Bernardi, F. The calculation of small molecular
(b) Breckenridge, W. H.; Ayles, V. L.; Wright, T. G. Evidence for interactions by the differences of separate total energies. Some
Emergent Chemical Bonding in Au+−Rg Complexes (Rg = Ne, Ar, procedures with reduced errors. Mol. Phys. 1970, 19, 553−566.
Kr, and Xe). J. Phys. Chem. A 2008, 112, 4209. (21) Reed, A. E.; Weinhold, F.; Curtiss, L. A. Intermolecular
(9) Mück, L. A.; Timoshkin, A. Y.; Hopffgarten, M. V.; Frenking, G. interactions from a natural bond orbital, donor-acceptor viewpoint.
Donor Acceptor Complexes of Noble Gases. J. Am. Chem. Soc. 2009, Chem. Rev. 1988, 88, 899−926.
131, 3942−3949. (22) Bader, R. W. F. Atoms in Molecules: A Quantum Theory; Oxford
(10) (a) Khriachtchev, L.; Pettersson, M.; Runeberg, N.; Lundell, J.; University Press: Oxford, 1990.
Räsänen, M. A stable argon compound. Nature 2000, 406, 874. (23) (a) Silvi, B.; Savin, A. Classification of chemical bonds based on
(b) Khriachtchev, L.; Pettersson, M.; Lignell, A.; Räsänen, M. A More topological analysis of electron localization functions. Nature 1994,
Stable Configuration of HArF in Solid Argon. J. Am. Chem. Soc. 2001, 371, 683−686. (b) Becke, A. D.; Edgecombe, K. E. A simple measure
123, 8610. of electron localization in atomic and molecular systems. J. Chem.
(11) Pettersson, M.; Khriachtchev, L.; Lignell, A.; Räsänen, M.; Phys. 1990, 92, 5397−5403.
Bihary, Z.; Gerber, R. B. HKrF in solid krypton. J. Chem. Phys. 2002, (24) Tian, L. Multiwfn: A Multifunctional Wavefunction Analyzer
116, 2508. (version 3.1). http://Multiwfn.codeplex.com (accessed May 22,
(12) Chen, Y. L.; Hu, W. P. Rate Constant Calculation for HArF → 2015).
Ar + HF and HKrF → Kr + HF Reactions by Dual-Level Variational (25) Dapprich, S.; Frenking, G. Investigation of Donor-Acceptor
Transition State Theory with Quantized Reactant State Tunneling. J. Interactions: A Charge Decomposition Analysis Using Fragment
Phys. Chem. A 2004, 108, 4449. Molecular Orbitals. J. Phys. Chem. A 1995, 99, 9352−9362.
(13) Borthakur, B.; Das, S.; Phukan, A. K. Strategies toward (26) (a) Brandhorst, K.; Grunenberg, J. Efficient computation of
realization of unsupported transition metal−boron donor−acceptor compliance matrices in redundant internal coordinates from Cartesian
complexes: an insight from theory. Chem. Commun. 2018, 54, 4975− Hessians for nonstationary points. J. Chem. Phys. 2010, 132, 184101−
4978. 184107. (b) Brovarets, O. O.; Zhurakivsky, R. O.; Hovorun, D. M.
(14) Kalita, A. J.; Rohman, S. S.; Kashyap, C.; Ullah, S. S.; Guha, A. DPT tautomerization of the long A·A* Watson-Crick base pair
K. Stabilization of neutral tricoordinate pyramidal boron: Enhanced formed by the amino and imino tautomers of adenine: combined QM
Lewis acidity and profound reactivity. Polyhedron 2020, 175, and QTAIM investigation. J. Mol. Model. 2013, 19, 4223−4237.
No. 114193. (27) Pyykkö, P. Additive Covalent Radii for Single-, Double-, and
(15) (a) Mikhailov, B. M.; Bubnov, Y. M. Organoboron Compounds Triple-Bonded Molecules and Tetrahedrally Bonded Crystals: A
in Organic Synthesis; Harwood Academic: New York, 1984. Summary. J. Phys. Chem. A 2015, 119, 2326−2337.
(b) Mikhailov, B. M.; Smirnov, V. N. 1-boraadamantane and its (28) Cremer, D.; Kraka, E. Chemical Bonds without Bonding
conversion to 1-hydroxyadamantane. Russ. Chem. Bull. 1973, 22, Electron Density Does the Difference Electron-Density Analysis
2124. (c) Kaszynski, P.; Pakhomov, S.; Gurskii, M. E.; Erdyakov, S. Y.; Suffice for a Description of the Chemical Bond? Angew. Chem. Int. Ed.
Starikova, Z. A.; Lyssenko, K. A.; Antipin, M. Y.; Young, V. G., Jr.; 1984, 23, 627.
Bubnov, Y. N. 1-Pyridine- and 1-Quinuclidine-1-boraadamantane as
Models for Derivatives of 1-Borabicyclo[2.2.2]octane. Experimental
and Theoretical Evaluation of the B−N Fragment as a Polar Isosteric
Substitution for the C−C Group in Liquid Crystal Compounds. J.
Org. Chem. 2009, 74, 1709−1720.
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