Code and datasets for "Subgraph-aware graph kernel neural network for link prediction in biological networks"
Developers
Menglu Li ([email protected]) , Zhiwei Wang, Luotao Liu, Xuan Liu, and Wen Zhang ([email protected]) from College of Informatics, Huazhong Agricultural University.
Tuturial
To get the experiment results by running the script main.py:
python main.py --dataset MDA --types hete --exp_name cv ###5-fold cross-validation
python main.py --dataset MDA --types hete --exp_name indep ###independent test
Requirements
- numpy 1.19.4
- pandas 0.23.4
- scipy 1.4.1
- scikit-learn 0.19.2
- pytorch 1.4.0
- python 3.7.2
Contact
Please feel free to contact us if you need any help.