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ENH: Interface for R #3291

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Merged
merged 19 commits into from
Jun 2, 2021
Merged

ENH: Interface for R #3291

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931a766
interface for R
Terf Jan 11, 2021
b336132
return None if R can't be found
Terf May 28, 2021
2638489
remove hardcoded variable
Terf May 28, 2021
f7cb9b2
R interface tests
Terf May 28, 2021
0dcf413
Update nipype/interfaces/r.py
Terf May 31, 2021
190b6f4
Update nipype/interfaces/tests/test_r.py
Terf May 31, 2021
02104a7
Update nipype/interfaces/tests/test_r.py
Terf May 31, 2021
6fcf05b
Update nipype/interfaces/tests/test_r.py
Terf May 31, 2021
b74fc85
Update nipype/interfaces/tests/test_r.py
Terf May 31, 2021
f72b510
Update nipype/interfaces/tests/test_r.py
Terf May 31, 2021
3d64c26
Update nipype/interfaces/tests/test_r.py
Terf May 31, 2021
c4cb539
Update nipype/interfaces/tests/test_r.py
Terf May 31, 2021
9cad3cd
@effigies R interface suggestions
Terf Jun 1, 2021
6aab778
Update nipype/interfaces/tests/test_r.py
Terf Jun 1, 2021
925905c
Merge branch 'nipy:master' into r-interface
Terf Jun 1, 2021
7f3713b
ran `make specs`
Terf Jun 1, 2021
7f92f63
un-chdir R test
Terf Jun 1, 2021
52e1a98
ran `black .`
Terf Jun 1, 2021
e576c90
skip in CI as R isn't installed
Terf Jun 1, 2021
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skip in CI as R isn't installed
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@Terf
Terf committed Jun 1, 2021
commit e576c9057bdbb7403fe7672225af784a06f28d2c
4 changes: 2 additions & 2 deletions nipype/interfaces/r.py
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Expand Up @@ -45,8 +45,8 @@ class RCommand(CommandLine):
"""Interface that runs R code

>>> import nipype.interfaces.r as r
>>> r = r.RCommand(rfile=False) # don't write script file
>>> r.inputs.script = "Sys.getenv('USER')"
>>> r = r.RCommand(rfile=False) # doctest: +SKIP
>>> r.inputs.script = "Sys.getenv('USER')" # doctest: +SKIP
>>> out = r.run() # doctest: +SKIP
"""

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