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ENH Expand spm interface thresholding options #3333

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ENH Expand spm interface thresholding options #3333

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d78ba24
Allow for choosing between FDR, FWE and uncorrected threshold
May 3, 2021
662ec09
Add FWEc clustersize correction (use_topo_fwe) and turn off default u…
May 3, 2021
79285f7
Added my name in the .zenodo.json file
May 3, 2021
11f13ae
Merge branch 'master' into expand_spm_functionalities
ldeangelisphys May 4, 2021
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Merge branch 'master' into expand_spm_functionalities
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@ldeangelisphys
ldeangelisphys authored May 4, 2021
commit 11f13ae25a80f92c54e47c2170cf8287db85de3a
8 changes: 1 addition & 7 deletions nipype/interfaces/spm/model.py
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Expand Up @@ -575,13 +575,6 @@ class ThresholdInputSpec(SPMCommandInputSpec):
stat_image = File(exists=True, desc="stat image", copyfile=False, mandatory=True)
contrast_index = traits.Int(
mandatory=True, desc='which contrast in the SPM.mat to use')
# use_fwe_correction = traits.Bool(
# True,
# usedefault=True,
# desc=('whether to use FWE (Bonferroni) '
# 'correction for initial threshold '
# '(height_threshold_type has to be '
# 'set to p-value)'))
multitest_correction = traits.Enum(
'none',
'FWE',
Expand Down Expand Up @@ -833,6 +826,7 @@ def aggregate_outputs(self, runtime=None):
elif line.startswith("FDRc = "):
setattr(outputs, 'FDRc',
float(line[len("FDRc = "):].strip()))

return outputs

def _list_outputs(self):
Expand Down
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