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Update datasets.py from v1alpha to v1alpha2 #2010

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Merged
tswast merged 2 commits into from
Mar 6, 2019
Merged

Update datasets.py from v1alpha to v1alpha2 #2010

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867c874
Update datasets.py from v1alpha to v1alpha2
noerog Feb 11, 2019
279d612
Fix styling.
noerog Feb 11, 2019
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32 changes: 26 additions & 6 deletions healthcare/api-client/datasets/datasets.py
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ def get_client(service_account_json, api_key):
"""Returns an authorized API client by discovering the Healthcare API and
creating a service object using the service account credentials JSON."""
api_scopes = ['https://www.googleapis.com/auth/cloud-platform']
api_version = 'v1alpha'
api_version = 'v1alpha2'
discovery_api = 'https://healthcare.googleapis.com/$discovery/rest'
service_name = 'healthcare'

Expand Down Expand Up @@ -181,7 +181,7 @@ def deidentify_dataset(
cloud_region,
dataset_id,
destination_dataset_id,
whitelist_tags):
keeplist_tags):
"""Creates a new dataset containing de-identified data
from the source dataset.
"""
Expand All @@ -195,7 +195,27 @@ def deidentify_dataset(
'destinationDataset': destination_dataset,
'config': {
'dicom': {
'whitelistTags': whitelist_tags
'keepList': {
'tags': [
'Columns',
'NumberOfFrames',
'PixelRepresentation',
'MediaStorageSOPClassUID',
'MediaStorageSOPInstanceUID',
'Rows',
'SamplesPerPixel',
'BitsAllocated',
'HighBit',
'PhotometricInterpretation',
'BitsStored',
'PatientID',
'TransferSyntaxUID',
'SOPInstanceUID',
'StudyInstanceUID',
'SeriesInstanceUID',
'PixelData'
]
}
}
}
}
Expand Down Expand Up @@ -261,9 +281,9 @@ def parse_command_line_args():
'will be written')

parser.add_argument(
'--whitelist_tags',
'--keeplist_tags',
default=None,
help='The data to whitelist, for example "PatientID" '
help='The data to keeplist, for example "PatientID" '
'or "StudyInstanceUID"')

command = parser.add_subparsers(dest='command')
Expand Down Expand Up @@ -334,7 +354,7 @@ def run_command(args):
args.cloud_region,
args.dataset_id,
args.destination_dataset_id,
args.whitelist_tags)
args.keeplist_tags)


def main():
Expand Down