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@NCI-GDC

Genomic Data Commons

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  1. gdc-workflow-overview gdc-workflow-overview Public

    Overview of GDC Harmonization Workflows

    29 9

  2. gdc-client gdc-client Public

    GDC Data Transfer Tool

    Python 148 40

  3. gdcdatamodel gdcdatamodel Public

    Translation layer between the GDC Data Dictionary and psqlgraph

    Python 28 3

  4. gdcdictionary gdcdictionary Public

    Data dictionary for the GDC

    Python 52 37

  5. psqlgraph psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    Python 22 6

Repositories

Showing 10 of 84 repositories
  • gdc-dnaseq-cwl Public

    CWL for GDC DNASeq workflows

    NCI-GDC/gdc-dnaseq-cwl’s past year of commit activity
    Common Workflow Language 22 Apache-2.0 14 0 3 Updated Apr 18, 2025
  • bwa-docker Public
    NCI-GDC/bwa-docker’s past year of commit activity
    Makefile 1 Apache-2.0 1 0 1 Updated Apr 18, 2025
  • psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    NCI-GDC/psqlgraph’s past year of commit activity
    Python 22 Apache-2.0 6 5 4 Updated Apr 18, 2025
  • gdc-frontend-framework Public
    NCI-GDC/gdc-frontend-framework’s past year of commit activity
    TypeScript 12 Apache-2.0 0 0 11 Updated Apr 18, 2025
  • indexd Public Forked from uc-cdis/indexd

    Index service server

    NCI-GDC/indexd’s past year of commit activity
    Python 3 Apache-2.0 20 0 13 Updated Apr 17, 2025
  • variant-filtration-tool Public

    Support tools for the GDC Variant Filtration Workflow

    NCI-GDC/variant-filtration-tool’s past year of commit activity
    Python 1 Apache-2.0 2 0 3 Updated Apr 17, 2025
  • bam_readgroup_to_json Public

    Extract a readgroup from a BAM, and write it as json

    NCI-GDC/bam_readgroup_to_json’s past year of commit activity
    Python 0 Apache-2.0 3 0 4 Updated Apr 17, 2025
  • fastqc_to_json Public
    NCI-GDC/fastqc_to_json’s past year of commit activity
    Python 0 Apache-2.0 1 0 1 Updated Apr 17, 2025
  • aliquot-maf-tools Public

    Tools for creating and filtering aliquot-level MAFs

    NCI-GDC/aliquot-maf-tools’s past year of commit activity
    Python 5 Apache-2.0 2 0 1 Updated Apr 16, 2025
  • samtools-metrics-sqlite Public
    NCI-GDC/samtools-metrics-sqlite’s past year of commit activity
    Python 0 Apache-2.0 1 0 3 Updated Apr 15, 2025
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