Downloading one run download the whole Bioproject

[HadrienG]

Hi,

I'm using bionode-ncbi to download a large number of files from the SRA. It has been working very well so far except for 54 samples, all belonging to the same Bioproject.

• Bioproject: PRJNA277291
• Example sample: SRR1834189

if I do

bionode-ncbi download sra SRR1834189

it downloads the 54 samples related to the bioproject, instead of only SRR1834189 like it should.

I was quite dumbfounded at first, but after a bit of digging it appears that all the offending samples are linking to the same Experiment ID (SRX900319), instead of having one experiment ID per sample like my other downloads, which confuses bionode-ncbi

Indeed, when I do

bionode-ncbi search sra --pretty SRR1834189

it returns the whole experiment (SRX900319) instead of the run.

Thanks in advance for you help (and thank you for the good work at bionode, it's been a great resource so far!)

Hadrien.