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Merged
Parent: Swaped hyphen for underscore in link
merged 4 commits into from
Nov 29, 2017
Merged

Download link for file-formats.bam #41

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18ffd4b
added wget instructions for bam file download
Nov 28, 2017
bee7a6d
typo and link fix
Nov 28, 2017
b9b6d82
removed duplicate text
Nov 29, 2017
8c19141
fixed URL to point to raw BAM file
Nov 29, 2017
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9 changes: 9 additions & 0 deletions _episodes/16-file-formats.md
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Expand Up @@ -46,6 +46,15 @@ parameterization.
~~~
{: .source}

___Note:___ To follow the example below, you need to download the example input file, *file-formats.bam*. The file is available from [https://github.com/common-workflow-language/user_guide/raw/gh-pages/_includes/cwl/file-formats.bam
](https://github.com/common-workflow-language/user_guide/raw/gh-pages/_includes/cwl/file-formats.bam) and can be downloaded e.g. via `wget`:

~~~
wget https://github.com/common-workflow-language/user_guide/raw/gh-pages/_includes/cwl/file-formats.bam
~~~
{: .source}


Now invoke `cwl-runner` with the tool wrapper and the input object on the
command line:

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