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Leftover sphinx / sphinx-pythia-theme related code needs to be cleaned everywhere #3

@erogluorhan

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@erogluorhan

This is likely going to be a huge issue that spreads over many repositories, so I think it is good to mention it here: Despite some cookbook migration to mystmd work performed already, there hasn't been any effort made to cleanup sphinx/sphinx-pythia-theme releated code and configuration from any repositories. Leaving them where they are will definitely lead to future confusions.

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