A peak caller for ChIP-Seq experiments that robustly handles short reads with *multiple* possible mappings. Releases are hosted here, but development source code is available at https://github.com/jakebiesinger/AREM.

A Google group has been set up to help with questions from the community and for announcements of new builds.

http://groups.google.com/group/arem-announcements

Features

  • Assignment of probabilities to each potential alignment for repetitive sequence in NGS datasets.
  • Peak calling for enrichment-based techniques, such as ChIP-Seq
  • Repetitive elements

Project Activity

See All Activity >

Follow AREM

AREM Web Site

Other Useful Business Software
$300 Free Credits to Build on Google Cloud Icon
$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of AREM!

Additional Project Details

Registered

2010-09-16
Report inappropriate content