PlantMAT download | SourceForge.net

Plant Metabolite Annotation Toolbox (PlantMAT) is a computational tool combining library search and combinatorial enumeration to facilitate the structural identification of plant specialized metabolites, e.g., saponins and flavonoid glycosides.

Features

Combinatorial enumeration of building blocks for the metabolite identification.
Integration of MS and MS/MS data to enhance the identification confidence.
Automated, streamlined workflow for batch metabolite annotation.
Expandable metabolite library to increase the coverage and applicability.

Project Samples

PlantMAT Concept

PlantMAT Interfaces and Workflow

Project Activity

See All Activity >

Follow PlantMAT

PlantMAT Web Site

Other Useful Business Software

Cut Data Warehouse Costs by 54% Icon

Cut Data Warehouse Costs by 54%

Easily migrate from Snowflake, Redshift, or Databricks with free tools.

BigQuery delivers 54% lower TCO with exabyte scale and flexible pricing. Free migration tools handle the SQL translation automatically.

Start Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of PlantMAT!

Additional Project Details

Registered

2016-08-09

Report inappropriate content

Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.

Start Free

Recommended Projects

ShinyCardinal
Mass spectrometry imaging data analysis software tool
SIVIC
SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
Language-Aware String Extractor
multi-encoding strings(1) replacement with language identification
ngPlant
ngPlant is a plant modeling software package. ngPlant interactive tool can be used to create 3D models of different plants and trees. ngPlant software libraries can be used by developers in their 3D applications, or plant modeling plugins.
SGMNS
Large-scale metabolite annotation is a bottleneck in untargeted metabolomics. Here, we present a structure-guided molecular network strategy (SGMNS) for deep annotation of untargeted ultra-performance liquid chromatography-high resolution mass spectrometry-based metabolomics data. SGMNS used a global connectivity molecular network (GCMN), which was constructed by the structural similarity of metabolites. When the annotation was performed, experimental MS/MS spectra of known metabolites as seeds were assigned to corresponding neighbor metabolites in GCMN as their “pseudo” spectra, and the propagation was performed by searching predicted retention times, MS1 and “pseudo” spectra against metabolite features. Then, the annotated metabolite features were used as new seeds for annotation propagation again. A total of 2,041 metabolites were annotated from a pooled biological sample, and the annotation accuracy was > 83% with RSD < 2%.