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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.6k 609

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 235 199

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 179 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    60 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 41 38

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 35 10

Repositories

Showing 10 of 62 repositories
  • snakemake-hpc-teaching-material Public
    snakemake/snakemake-hpc-teaching-material’s past year of commit activity
    TeX 0 CC-BY-SA-4.0 0 1 2 Updated Oct 14, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,600 MIT 609 1,122 (1 issue needs help) 84 Updated Oct 14, 2025
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy’s past year of commit activity
    Python 25 MPL-2.0 11 14 6 Updated Oct 14, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 235 199 14 25 Updated Oct 14, 2025
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 35 MIT 10 5 0 Updated Oct 13, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 41 MIT 38 38 10 Updated Oct 7, 2025
  • snakedeploy-github-action Public

    A github action for using snakedeploy

    snakemake/snakedeploy-github-action’s past year of commit activity
    Dockerfile 2 MIT 2 0 0 Updated Oct 6, 2025
  • snakemake-executor-plugin-kubernetes Public

    A snakemake executor plugin for submission of jobs to Kubernetes

    snakemake/snakemake-executor-plugin-kubernetes’s past year of commit activity
    Python 4 MIT 10 2 4 Updated Oct 6, 2025
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    snakemake/mastodon-release-post-action’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 1, 2025
  • snakemake.github.io Public

    Snakemake homepage

    snakemake/snakemake.github.io’s past year of commit activity
    HTML 3 MIT 3 0 0 Updated Oct 1, 2025
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