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Pull requests: snakemake/snakemake

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Pull requests list

fix: Unpack AnnotatedString in _apply_wildcards
#3798 opened Oct 16, 2025 by TomJohnZ Loading…
2 tasks done
1
5
chore(main): release 9.13.3 autorelease: pending
#3794 opened Oct 14, 2025 by snakemake-bot Loading…
1
feat: replace #3365 with a unified and robust usewith function for rule parameter updates
#3793 opened Oct 13, 2025 by Hocnonsense Loading…
1 of 2 tasks
5
fix: small issues
#3792 opened Oct 13, 2025 by Hocnonsense Loading…
1 of 2 tasks
2
2
test: symlink to directory "has older modification time" than target (#3782)
#3784 opened Oct 10, 2025 by thekswenson Loading…
2 tasks
2
fix: convert cpu_usage to fraction
#3781 opened Oct 8, 2025 by fgvieira Loading…
2 tasks done
4
fix: set log level accordingly when debug dag is set
#3778 opened Oct 6, 2025 by cademirch Loading…
2 tasks
1
2
build(deps): bump actions/checkout from 4 to 5 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#3775 opened Oct 6, 2025 by dependabot bot Loading…
1
docs: update for discord and stack overflow
#3765 opened Oct 1, 2025 by cmeesters • Draft
1
fix: Do not release lock when job finished
#3744 opened Sep 18, 2025 by ChristofferCOASD Loading…
11
feat: support python 3.14
#3739 opened Sep 12, 2025 by maarten-k • Draft
26 of 27 tasks
3
feat!: federated execution by specifying per-rule executors WIP Work in progress. Not meant for merging.
#3721 opened Sep 3, 2025 by johanneskoester • Draft
2 tasks
6
fix: rerun rule if timestamp updated, even if checksum same (rerun-trigger mtime)
#3690 opened Aug 4, 2025 by ckronlage Loading…
2 tasks done
@johanneskoester
4
Added high-level diagrams
#3647 opened Jun 29, 2025 by ivanmilevtues Loading…
2 tasks done
5
fix: create local clone of git repos for source files from hosting providers
#3643 opened Jun 23, 2025 by johanneskoester Loading…
2 tasks done
6
fix: Add support for pathlib in notebook field
#3636 opened Jun 18, 2025 by staadecker Loading…
4
fix: pluralise checkpoints.get()
#3562 opened May 6, 2025 by kdm9 Loading…
18
chore: add test case for ensuring that remote output files are still properly uploaded to storage in case of failing jobs within the group
#3549 opened Apr 25, 2025 by johanneskoester Loading…
2 tasks done
1
fix: Refactor of format_job_exec related to issue 2981, 3221 stale
#3521 opened Apr 8, 2025 by tbooth Loading…
7
feat: persist the names of the parameters enhancement New feature or request hackathon-2025
#3440 opened Mar 14, 2025 by DrYak Loading…
2 tasks done
8
fix: Add a check for nodelocal when selecting which files to store stale
#3439 opened Mar 14, 2025 by tadasbar Loading…
2 tasks done
@tadasbar
5
fix: enable default default prefix for source archive upload stale
#3432 opened Mar 14, 2025 by jakevc • Draft
2 tasks
1
5
feat: initial save write cli command/profile and config info stale
#3427 opened Mar 14, 2025 by cademirch Loading…
1 of 2 tasks
16
feat: Allow for dict queries in storage objects
#3425 opened Mar 14, 2025 by MattMonk Loading…
2 tasks done
@MattMonk
3
fix: standardize handling of resources bug Something isn't working
#3421 opened Mar 13, 2025 by pvandyken Loading…
2 tasks done
@pvandyken
63
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